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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgagtcttagatttggtttatgtatattcatgcatcattagcagcaataattttatgctttatcttttgggttttgtagATTTTTTCTGTAACTGTGAGAGTCATCCAAAGAGATTCCGAGGAGAAGAAGGCATCTTTTAATCCAAGGCCATATTTCAGGTTGTTTATTAACTGGCTTT

Basic information

species Vitis vinifera
transcript Vv00s0144g00010.t01
intron # 14
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0144g00010.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: GLYMA03G27270.1 (Glycine max), 3'ss of exon 43
----------------------------------------------gtttgagtcttagatttggtttatgtatattcatgcat-cattagcagcaataattttatgctttatcttttgg----gttttgt---agATTTTTTCTGTAACTGTGAGAGTCATCCAAAGAGATTCCGAGGAGAAGAAGGCATCTTTTAATCCAAGGCCATATTTCAGGTTGTTTATTAACTGGCTTT
                                               | |   ||||    ||  |||    |  ||| |   | | |||  |   |||   || || | ||   |||      | |||||   ||||| |  | || ||||| ||| ||||   || |||| | |||||||||||||| ||||||||||||||||||  |||||| || || || ||||||||| 
gtgtgtaataaactaaagtttgaatgcattctctctgtctctctctctctctctcttgctattttttttgacagcttcttttgtgctttattaattatatagttgtggtctaatatttcccattgctttgtggcagATTCTGGCAGTTACTGTCAGATTCATTATAAAAGATGCAGAGGAGAAGAAGGCCTCTTTTAATCCAAGGCCACTTTTCAGATTATTCATCAACTGGCTTC

upper sequence: Vv00s0144g00010.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: GLYMA07G14770.1 (Glycine max), 3'ss of exon 43
gtttgagtcttagatttggtttatgtatattcatgcatcattagcagcaataattttatgctttatcttttgggttttgtagATTTTTTCTGTAACTGTGAGAGTCATCCAAAGAGATTCCGAGGAGAAGAAGGCATCTTTTAATCCAAGGCCATATTTCAGGTTGTTTATTAACTGGCTTT
                || |||||  ||     |  ||  ||     |  |||| ||   | ||   || ||        ||||| |  | || ||||| ||| ||||   || |||| | |||||||||||||| ||||||||||||||||||  |||||| || || || ||||||||| 
---------------gtgctttattaat-----tatattgttgaggtc--taatatttcccattgctttatga------cagATTCTGGCAGTTACTGTCAGATTCATTATAAAAGATGCAGAGGAGAAGAAGGCCTCTTTTAATCCAAGGCCACTTTTCAGATTATTCATCAACTGGCTTC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tattcatgcatcattagcagcaataattttatgctttatcttttgggttttgtagATTTTTTCTGTAACTGTGAGAGTCATCCAAAGAGATTCCGAGGAGAAGAAGGCATCTTTTAATCCAAGGCCATATTTCAGGTTGTTTATTAACTGGCTTT
                     aataattttatgcttt  TA-rich tract