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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgggtttatctgaactaatgctttactcatttcatagttggtttttgactaattaggtcaaatatacagTAGTCAGGGAAAAACCCTGAGAAATGCTGGATGGGATTTCAGCCTTAGTGGCTCACAGAGTACAGGAACCGTTCGAAGTGTCATAAGACCACCTCAGGCT

Basic information

species Vitis vinifera
transcript Vv19s0014g02310.t01
intron # 13
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv19s0014g02310.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: GLYMA12G35510.1 (Glycine max), 3'ss of exon 12
gtgggtt-tatctg--aactaatgcttt-actcatttcatagttggtttttgactaattaggtcaaatatacagTAGTCAGGGAAAAACCCTGAGAAATGCTGGATGGGATTTCAGCCTTAGTGGCTCACAGAGTACAGGAACCGTTCGAAGTGTCATAAGACCACCTCAGGCT
|| |||| |  |||    ||| |  ||| | |   |  ||| |   ||||| |   |     || ||| | ||||  |||||| |||||||||| || |||||||||||| |||||| || |||| |||||| |||| |||||| |||| | |||     |||||||||||  |
gtaggttatgactgttggctactatttttattttatatatattgaattttttatggacagtttctaatttgcagTGATCAGGGTAAAACCCTGAAAAGTGCTGGATGGGACTTCAGCATTGGTGGATCACAGGGTACTGGAACCTTTCGTAATGTTTCTCGACCACCTCAGTTT

upper sequence: Vv19s0014g02310.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: GLYMA12G27300.2 (Glycine max), 3'ss of exon 13
gtgggtt-tatctg---aactaatgctttactcatttcatagttggtttt-tgactaattaggtcaaatatacagTAGTCAGGGAAAAACCCTGAGAAATGCTGGATGGGATTTCAGCCTTAGTGGCTCACAGAGTACAGGAACCGTTCGAAGTGTCATAAGACCACCTCAGGCT
|| ||||  |  ||   |  || ||||||  | || | | |||   |||| |||   |  |  || ||  | |||| | || || ||||||||||||| | |||||||||| |||||| || |||| |||||| |||| |||||| |||| |||||   | | |||||||||  |
gtaggttgcaagtgtttagttactgcttt--ttatgttaaagtgaattttctgatggacaatttctaaattgcagTGGCCAAGGTAAAACCCTGAGAAGTTCTGGATGGGACTTCAGCATTGGTGGATCACAGGGTACTGGAACCTTTCGTAGTGTGTCACGGCCACCTCAGTTT

upper sequence: Vv19s0014g02310.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: GLYMA13G34970.1 (Glycine max), 3'ss of exon 13
gtgggtt-tatctg--aactaatgcttt-actcatttcatagttggtttttgactaattaggtcaaatatacagTAGTCAGGGAAAAACCCTGAGAAATGCTGGATGGGATTTCAGCCTTAGTGGCTCACAGAGTACAGGAACCGTTCGAAGTGTCATAAGACCACCTCAGGCT
|| |||| |   ||    ||| |  ||| | |   |  ||| |   ||||| |   |     || ||| | ||||  |||||| |||||||||| || |||||||||||| |||||| || |||| |||||| |||| |||||| | || | |||     ||||||| |||  |
gtaggttatgattgttggctactatttttattttatatatattgaattttttatggacagtttctaatttgcagTGATCAGGGTAAAACCCTGAAAAGTGCTGGATGGGACTTCAGCATTGGTGGATCACAGGGTACTGGAACCTTCCGTAATGTTTCTCGACCACCGCAGTTT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32270515|gb|CD719674.1|CD719674
EST:     ACTGTGAAGGTGACAAGAGATTCAAGGGGTGAAGAAACTGTTCGAGCCAG                         TAGTCAAGGAAAAACCCTGAGAAATGCTGGATGGGATTTCAGCCTTAGTGG
genomic: ACTGTGAAGGTGACAAGAGATTCAAGGGGTGAAGAAACTGTTCGAGCCAGgtgggtttat ... aaatatacagTAGTCAGGGAAAAACCCTGAGAAATGCTGGATGGGATTTCAGCCTTAGTGG
EST: gi|30322942|gb|CD006204.1|CD006204
EST:     ACTGTGAAGGTGACAAGAGATTCAAGGGGTGAAGAAACTGTTCGAGCCAG                         TAGTCAAGGAAAAACCCTGAGAAATGCTGGATGGGAT
genomic: ACTGTGAAGGTGACAAGAGATTCAAGGGGTGAAGAAACTGTTCGAGCCAGgtgggtttat ... aaatatacagTAGTCAGGGAAAAACCCTGAGAAATGCTGGATGGGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctaatgctttactcatttcatagttggtttttgactaattaggtcaaatatacagTAGTCAGGGAAAAACCCTGAGAAATGCTGGATGGGATTTCAGCCTTAGTGGCTCACAGAGTACAGGAACCGTTCGAAGTGTCATAAGACCACCTCAGGCT
                                gactaat  putative branch site (score: 2)
                           tttttgactaatta  TA-rich tract