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...gtatgtctacacccacacacatacatatgcatgcatgcatgaatatatatatcttgtattattacctcttgaaactaaaattgatcatttgaactttcagGCTATCTCCTTTTCAAACTTATATGCACCTGAGCATCTGATAATTAATGTGAAAGATGCTGAGAAGTGGGAGAATTTCATTGAGAATGCAG
species | Vitis vinifera |
transcript | Vv18s0166g00300.t01 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: CTAAAGCTTTGAGCCACAGTTTCACTGTGTTTGCTCGCGATATGGTTGAG GCTATCTCCTTTTCAAACTTATATGCACCTGAGCATCTGATAATTAATGTGEST: gi|71885572|gb|DT034627.1|DT034627
genomic: CAAAAGCTTTGAGCCACAGTTTCACTGTGTTTGCTCGCAATATGGTTGAGgttagtggtc ... gaactttcagGCTATCTCCTTTTCAAACTTATATGCACCTGAGCATCTGATAATTAATGTG
EST: CAAAAGCTTTGAGCCACAGTTTCACTGTGTTTGCTCGCGATATGGTTGAG GCTATCTCCTTTTCAAACTTATATGCACCTGAGCATCTGATAATTAATGTGEST: gi|30126863|gb|CB912202.1|CB912202
genomic: CAAAAGCTTTGAGCCACAGTTTCACTGTGTTTGCTCGCAATATGGTTGAGgttagtggtc ... gaactttcagGCTATCTCCTTTTCAAACTTATATGCACCTGAGCATCTGATAATTAATGTG
EST: CAAAAGCTTTGAGCCACAGTTTCACTGTGTTTGCTCGCGATATGGTTGAG GCTATCTCCTTTTCAAACTTATATGCACCTGAGCATCTGATAATTAATGTGEST: gi|351054495|gb|FQ450579.1|FQ450579
genomic: CAAAAGCTTTGAGCCACAGTTTCACTGTGTTTGCTCGCAATATGGTTGAGgttagtggtc ... gaactttcagGCTATCTCCTTTTCAAACTTATATGCACCTGAGCATCTGATAATTAATGTG
EST: CAAAAGCTTTGAGCCACAGTTTCACTGTGTTTGCTCGCGATATGGTTGAG GCTATCTCCTTTTCAAACTTATATGCACCTGAGCATCTGATAATTAATGTGEST: gi|71882273|gb|DT031328.1|DT031328
genomic: CAAAAGCTTTGAGCCACAGTTTCACTGTGTTTGCTCGCAATATGGTTGAGgttagtggtc ... gaactttcagGCTATCTCCTTTTCAAACTTATATGCACCTGAGCATCTGATAATTAATGTG
EST: CAAAAGCTTTGAGCCACAGTTTCACTGTGTTTGCTCGCGATATGGTTGAG GCTATCTCCTTTTCAAACTTATATGCACCTGAGCATCTGATAATTAATGTGEST: gi|71874738|gb|DT023793.1|DT023793
genomic: CAAAAGCTTTGAGCCACAGTTTCACTGTGTTTGCTCGCAATATGGTTGAGgttagtggtc ... gaactttcagGCTATCTCCTTTTCAAACTTATATGCACCTGAGCATCTGATAATTAATGTG
EST: CAAAAGCTTTGAGCCACAGTTTCACTGTGTTTGCTCGCGATATGGTTGAG GCTATCTCCTTTTCAAACTTATATGCACCTGAGCATCTGATAATTAATGTG
genomic: CAAAAGCTTTGAGCCACAGTTTCACTGTGTTTGCTCGCAATATGGTTGAGgttagtggtc ... gaactttcagGCTATCTCCTTTTCAAACTTATATGCACCTGAGCATCTGATAATTAATGTG
tatatatcttgtattattacctcttgaaactaaaattgatcatttgaactttcagGCTATCTCCTTTTCAAACTTATATGCACCTGAGCATCTGATAATTAATGTGAAAGATGCTGAGAAGTGGGAGAATTTCATTGAGAATGCAG
ctttc CT-rich tract
taaaattgatcattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtctacacccacacacatacatatgcatgcatgcatgaatatatatatcttgtattattacctcttgaaactaaaattgatcatttgaactttcagGCTATCTCCTTTTCAAACTTATATGCACCTGAGCATCTGATAATTAATGTGAAAGATGCTGAGAAGTGGGAGAATTTCATTGAGAATGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
gtatgtc
- - - - - - ccacaca
- - - - - - - - - -catacat
- - - - - - - - - - - - - - gcatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaactaa