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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattataaactgattgactgtccctaaattctcctatcttctctgcatgtgttttcatctgaatgctgtgctcagaccaccgaaaagccttgaaatgtttcccttcctttttttgttgctgttttataacagGAAGATTGAAGAAAAACGAGGGGTTACCTTAACTGATTCTGGAATGCCACAAGTAAAAACACCTTCTTTTTCTGATGGGCTTCAGTCTGAGGCATTGAAA

Basic information

species Vitis vinifera
transcript Vv18s0089g00030.t01
intron # 13
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110690072|gb|EE066849.1|EE066849
EST:     CATGCTCTTTGTTAAGGATATCCTCAG                         GAAGATTGAAGAAAAACGAGGGGTTACCTTAACTGATTCTGGAATGCCACA
genomic: CATGCTCTTTGTTAAGGATATCCTCAGgtattataaa ... tttataacagGAAGATTGAAGAAAAACGAGGGGTTACCTTAACTGATTCTGGAATGCCACA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caccgaaaagccttgaaatgtttcccttcctttttttgttgctgttttataacagGAAGATTGAAGAAAAACGAGGGGTTACCTTAACTGATTCTGGAATGCCACAAGTAAAAACACCTTCTTTTTCTGATGGGCTTCAGTCTGAGGCATTGAAA
                  tgtttcccttcctttt  CT-rich tract
                              tttttttgtt  TA-rich tract