Sequence
atgc intronic sequence ATGC exonic sequence...tctccataggccaaaacaaggatcctgtgcttagcatagttttcattagttgtgggttgtgatggtttcagctaatcctaattttttgcatgatgtgcagATTAGCAACTATGCCAGTATTATTTTCATGGCCCTCTTCATATCTATAGCTGCAACTGGTGTCCTTGAGATGCAGTGGGGACGGGTTGCCATAGATGACT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv18s0072g00370.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: GLYMA02G08920.1 (Glycine max), 3'ss of exon 13
tctccataggccaaaa-caaggatc-ctgtgcttagcatagttttcattagttgtgggttgtgatggtttcagctaat-cctaattttttgcatgatgtgcagATTAGCAACTATGCCAGTATTATTTTCATGGCCCTCTTCATATCTATAGCTGCAACTGGTGTCCTTGAGATGCAGTGGGGACGGGTTGCCATAGATGACT
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---gctcagacaaaattcaagaattgctctaaacaataaacatagaatgtgatgcactttatggtgctttaaactaatgcttttttttttcttttcttcacagATAAGTAACTATGCCAGTATCATTTTCATGGCCCTCTTCATCTCTATAGCTGCAACTGGCATCCTGGAAATGCAGTGGGGAGGTGTCGGTATACATGACT
upper sequence: Vv18s0072g00370.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: GLYMA16G28080.1 (Glycine max), 3'ss of exon 12
---tctccataggccaaaacaaggatcctgtgcttagca-tagttttcattagttgtgggttgtgatggtttcagctaatcctaattttttgcatgatgtgcagATTAGCAACTATGCCAGTATTATTTTCATGGCCCTCTTCATATCTATAGCTGCAACTGGTGTCCTTGAGATGCAGTGGGGACGGGTTGCCATAGATGACT
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tactgtgctcagacaaaattcaagaat-tgctctaaacaataaacagaatgtgatgcactttatggtgattttaactaatgcttttttctttcctt---cacagATAAGTAACTATGCCAGTATCATTTTCATGGCCCTCTTCATCTCTATAGCTGCAACTGGCATCCTGGAAATGCAGTGGGGAGGTGTCGGTATACACGACT
upper sequence: Vv18s0072g00370.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: GLYMA10G36790.1 (Glycine max), 3'ss of exon 13
----tctccataggccaaaa--caaggatcctgtgcttagcatagttttcattagttgtgggttgtgatggtttcagctaatcctaattttttgcatgatgtgcagATTAGCAACTATGCCAGTATTATTTTCATGGCCCTCTTCATATCTATAGCTGCAACTGGTGTCCTTGAGATGCAGTGGGGACGGGTTGCCATAGATGACT
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gccatttgagcaattttatattctaggaatccata---aatatagaatgtttttgatgcattgtgtagaacttttagctgatgct--ttgtgttcttgttac-cagATTAGCAACTATGCCAGTATCATTTTCATGGCACTCTTCATCTCCATAGCTGTGACTAGCATCCTTGAAATGCAGTGGGGAGGTGTTGGCATACATGACT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttagttgtgggttgtgatggtttcagctaatcctaattttttgcatgatgtgcagATTAGCAACTATGCCAGTATTATTTTCATGGCCCTCTTCATATCTATAGCTGCAACTGGTGTCCTTGAGATGCAGTGGGGACGGGTTGCCATAGATGACT
tcctaat putative branch site (score: 2)
taatcctaatttttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tctccataggccaaaacaaggatcctgtgcttagcatagttttcattagttgtgggttgtgatggtttcagctaatcctaattttttgcatgatgtgcagATTAGCAACTATGCCAGTATTATTTTCATGGCCCTCTTCATATCTATAGCTGCAACTGGTGTCCTTGAGATGCAGTGGGGACGGGTTGCCATAGATGACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
tctccat
- - - - - - aaaacaa
- - - - - - - - - - gatcctg
- - - - - - - - - - - - - -tgcttag
- - - - - - - - - - - - - - - - - - - - - - - - - - -gggttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttcagct