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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaatttcaaaaaaaataaaataaacagaatctgtcatcaaagatcaatttggcttctgttttccttgcgttcatgaaccaatgattatatttgaatgtgtctgaagcagAAAAAGAAGTTTTGTTGGTGAAGAAGAGATTGCTGCAGAGGACCACTTGTTTAGCGGCATGTTAACTTATCGCGTTTCAATACATATATATTTGGATTCA

Basic information

species Vitis vinifera
transcript Vv18s0001g12950.t01
intron # 13
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110368261|gb|EC932232.1|EC932232
EST:     AAGAAGAACTTCTTGCATACATAGACAGGCAAGAAGAAGCCAAGTCCCAG                         AAAAAGAAGTTTTGTTGGTGAAGAAGAGATTGCTGCAGAGGACCACTTGTT
genomic: AAGAAGAACTTCTTGCATACATAGACAGGCAAGAAGAAGCCAAGTCCCAGgtaaatttca ... tctgaagcagAAAAAGAAGTTTTGTTGGTGAAGAAGAGATTGCTGCAGAGGACCACTTGTT
EST: gi|33407676|gb|CF213303.1|CF213303
EST:     AAGAAGAACTTCTTGCATACATAGACAGGCAAGAAGAAGCCAAGTCCCAG                         AAAAAGAAGTTTTGTTGGTGAAGAAGAGATTGCTGCAGAGGACCACTTGTT
genomic: AAGAAGAACTTCTTGCATACATAGACAGGCAAGAAGAAGCCAAGTCCCAGgtaaatttca ... tctgaagcagAAAAAGAAGTTTTGTTGGTGAAGAAGAGATTGCTGCAGAGGACCACTTGTT
EST: gi|30130561|gb|CB915900.1|CB915900
EST:     GCCAAGTCCCAG                         AAAAAGAAGTTTTGTTGGTGAAGAAGAGATTGCTGCAGAGGACCACTTGTT
genomic: GCCAAGTCCCAGgtaaatttca ... tctgaagcagAAAAAGAAGTTTTGTTGGTGAAGAAGAGATTGCTGCAGAGGACCACTTGTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctgttttccttgcgttcatgaaccaatgattatatttgaatgtgtctgaagcagAAAAAGAAGTTTTGTTGGTGAAGAAGAGATTGCTGCAGAGGACCACTTGTTTAGCGGCATGTTAACTTATCGCGTTTCAATACATATATATTTGGATTCA
                         aatgattatatttgaa  TA-rich tract