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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttagcgcaaaatgagctctatttaggtactagggaatgatgtccttaaactgaaagaaatggaatggttatgacattctgttgcagATCTCCTCCTCTGTAATGACCATTAGCCTCCTAGTAGTTGCAGTGTCATTCTTCTTAAAG

Basic information

species Vitis vinifera
transcript Vv18s0001g12560.t01
intron # 13
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349811010|gb|FQ405998.1|FQ405998
EST:     GAATTACTACATGGTTGCTGGACAAAGCTGGACGTCGGCTTCTACTTATT                         ATCTCCTCCTCTGTAATGACCATTAGCCTCCTAGTAGTTGCAGTGTCATTC
genomic: GAATTACTACATGGTTGCTGGACAAAGCTGGACGTCGGCTTCTACTTATTgtgagttagc ... tctgttgcagATCTCCTCCTCTGTAATGACCATTAGCCTCCTAGTAGTTGCAGTGTCATTC
EST: gi|110384138|gb|EC948555.1|EC948555
EST:     GAATTACTACATGGTTGCTGGACAAAGCTGGACGTCGGCTTCTACTTATT                         ATCTCCTCCTCTGTAATGACCATTAGCCTCCTAGTAGTTGCAGTGTCATTC
genomic: GAATTACTACATGGTTGCTGGACAAAGCTGGACGTCGGCTTCTACTTATTgtgagttagc ... tctgttgcagATCTCCTCCTCTGTAATGACCATTAGCCTCCTAGTAGTTGCAGTGTCATTC
EST: gi|28968713|gb|CB347746.1|CB347746
EST:     CATGGTTGCTGGACAAAGCTGGACGTCGGCTTCTACTTATT                         ATCTCCCCCTCTGTAATGACCATTAGCCTCCTAGTAGTTGCAGTGTCATTC
genomic: CATGGTTGCTGGACAAAGCTGGACGTCGGCTTCTACTTATTgtgagttagc ... tctgttgcagATCTCCTCCTCTGTAATGACCATTAGCCTCCTAGTAGTTGCAGTGTCATTC
EST: gi|33404093|gb|CF209720.1|CF209720
EST:     GAATTACTACATGGTTGCTGGACAAAGCTGGACGTCGGCTTCTACTTATT                         ATCTCCTCCTCTGTAATGACCATTAGCCTCCTAGTAGTTGCAGTGTCATTC
genomic: GAATTACTACATGGTTGCTGGACAAAGCTGGACGTCGGCTTCTACTTATTgtgagttagc ... tctgttgcagATCTCCTCCTCTGTAATGACCATTAGCCTCCTAGTAGTTGCAGTGTCATTC
EST: gi|110382391|gb|EC939356.1|EC939356
EST:     GAATTACTACATGGTTGCTGGACAAAGCTGGACGTCGGCTTCTACTTATT                         ATCTCCTCCTCTGTAATGACCATTAGCCTCCTAGTAGTTGCAGTGTCATTC
genomic: GAATTACTACATGGTTGCTGGACAAAGCTGGACGTCGGCTTCTACTTATTgtgagttagc ... tctgttgcagATCTCCTCCTCTGTAATGACCATTAGCCTCCTAGTAGTTGCAGTGTCATTC
EST: gi|33404176|gb|CF209803.1|CF209803
EST:     ATGGTTGCTGGACAAAGCTGGACGTCGGCTTCTACTTATT                         ATCTCCTCCTCTGTAATGACCATTAGCCTCCTAGTAGTTGCAGTGTCATTC
genomic: ATGGTTGCTGGACAAAGCTGGACGTCGGCTTCTACTTATTgtgagttagc ... tctgttgcagATCTCCTCCTCTGTAATGACCATTAGCCTCCTAGTAGTTGCAGTGTCATTC
EST: gi|351014223|gb|FQ434812.1|FQ434812
EST:     GAATTACTACATGGTTGCTGGACAAAGCTGGACGTCGGCTTCTACTTATT                         ATCTCCTCCTCTGTAATGACCATTAGCCTCCTAGTAGTTGCAGTGTCATTC
genomic: GAATTACTACATGGTTGCTGGACAAAGCTGGACGTCGGCTTCTACTTATTgtgagttagc ... tctgttgcagATCTCCTCCTCTGTAATGACCATTAGCCTCCTAGTAGTTGCAGTGTCATTC
EST: gi|33402192|gb|CF207819.1|CF207819
EST:     GAATTACTACATGGTTGCTGGACAAAGCTGGACGTCGGCTTCTACTTATT                         ATCTCCTCCTCTGTAATGACCATTAGCCTCCTAGTAGTTGCAGTGTCATTC
genomic: GAATTACTACATGGTTGCTGGACAAAGCTGGACGTCGGCTTCTACTTATTgtgagttagc ... tctgttgcagATCTCCTCCTCTGTAATGACCATTAGCCTCCTAGTAGTTGCAGTGTCATTC
EST: gi|33402179|gb|CF207806.1|CF207806
EST:     AATTACTACATGGTTGCTGGACAAAGCTGGACGTC-GCNTTCTACTTATT                         ATCTCCTCCTCTGTAATGACCATTAGCCTCCTAGTAGTTGCAGTGTCATTC
genomic: AATTACTACATGGTTGCTGGACAAAGCTGGACGTCGGC-TTCTACTTATTgtgagttagc ... tctgttgcagATCTCCTCCTCTGTAATGACCATTAGCCTCCTAGTAGTTGCAGTGTCATTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gggaatgatgtccttaaactgaaagaaatggaatggttatgacattctgttgcagATCTCCTCCTCTGTAATGACCATTAGCCTCCTAGTAGTTGCAGTGTCATTCTTCTTAAAG
                                            ttctgtt  CT-rich tract
                     aaagaaat  TA-rich tract