Sequence
atgc intronic sequence ATGC exonic sequencegtaaataggagtttttgaacttctggagtttctgccttgtaaaaactgaattccacttgttcaccatttttattactgcagCAAGAGAGAGATCGTCTGTTGGCTGAAGTTGAAAACCGTGCTGCTAATTCTGATGGGCAAGCACAAAAATTGCAAGATATTCATGCCCAGAAATTAAAAA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv18s0001g10090.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: GLYMA14G09390.1 (Glycine max), 3'ss of exon 13
-gtaaataggagtttttgaacttctggagtttctgccttgtaaaaactgaattccacttgttcaccatttttattactgcagCAAGAGAGAGATCGTCTGTTGGCTGAAGTTGAAAACCGTGCTGCTAATTCTGATGGGCAAGCACAAAAATTGCAAGATATTCATGCCCAGAAATTAAAAA
| ||||| | || | || | | ||| ||| |||| | | | | | | | || ||||| |||||| |||||| |||||||| ||||||||||||||||| | |||||| ||||||||||| ||| || |||| | ||||| |||||||| ||||||||||
gttcaatagaaattctgcaaagtt---atttttctcctacagaaaattcatatttatatatgcgcctgatttatgtatgcagCGAGAGAGGGATCGTCTTTTGGCTGAAGTTGAAAATCTTGCTGCCAATTCTGATGGACAAATGCAGAAATCAGAGGATATCCATGCCCAAAAATTAAAAA
upper sequence: Vv18s0001g10090.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: GLYMA04G04380.1 (Glycine max), 3'ss of exon 13
-gtaaataggagtttttgaacttctggagtttctgccttgtaaaaactgaattccacttgttcaccatttttattactgcagCAAGAGAGAGATCGTCTGTTGGCTGAAGTTGAAAACCGTGCTGCTAATTCTGATGGGCAAGCACAAAAATTGCAAGATATTCATGCCCAGAAATTAAAAA
| |||| |||| | || || || | ||||| | || | || | | | ||||| | || ||| |||||||||| |||| ||||||||||||||||| | |||||| ||| ||||||| || |||| ||||| | ||||| |||||||| ||||| |||
gttcaatatcagttatgcaaatttatttaacactacaaaaaaaaaattaaaattcatatatgtgcttgatttatgaatgtagCGAGAGAGAGATTGTCTTTTGGCTGAAGTTGAAAATCTTGCTGCCAATACTGATGGACATACACAGAAATTAGAGGATATCCATGCCCAAAAATTGAAAG
upper sequence: Vv18s0001g10090.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: GLYMA17G35780.1 (Glycine max), 3'ss of exon 13
-gtaaataggagtttttgaacttctggagtttctgccttgtaaaaactgaattccacttgttcaccatttttattactgcagCAAGAGAGAGATCGTCTGTTGGCTGAAGTTGAAAACCGTGCTGCTAATTCTGATGGGCAAGCACAAAAATTGCAAGATATTCATGCCCAGAAATTAAAAA
| ||||| |||| | || | | ||| ||| |||| | | | | | | | | ||||| |||||| ||| || |||||||| ||||||||||||||||| | |||||| ||||||||||| ||| ||| |||| | ||||| |||||||| ||||| ||||
gttcaatagaagttctgcaaagtt---attttgctcctacagaaaattcatatttatatatgcgtctgatttatgtatgcagCGAGATAGGGATCGTCTTTTGGCTGAAGTTGAAAATCTTGCTGCCAATTCTGATGGACAAATACAGAAATCAGAGGATATCCATGCCCAAAAATTGAAAA
upper sequence: Vv18s0001g10090.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: GLYMA06G04520.1 (Glycine max), 3'ss of exon 13
-gtaaataggagtttttgaacttctggagtttctgccttgtaaaaactgaattccacttgttcaccatttttattactgcagCAAGAGAGAGATCGTCTGTTGGCTGAAGTTGAAAACCGTGCTGCTAATTCTGATGGGCAAGCACAAAAATTGCAAGATATTCATGCCCAGAAATTAAAAA
| |||| |||| | || || | | | || | ||||| | || | || | | | | ||||| | | ||| |||||||||| |||| ||||||||||||||||| | |||||| ||| ||||||| ||| ||| |||| | ||||| |||||||| ||||| ||||
gttcaatatcagttatgcaaatttttcaata-ctaca--aaaaaaattaaaattcatatatgcgcttgctttatgaatacAGAGAGAGAGAGATTGTCTTTTGGCTGAAGTTGAAAATCTTGCTGCCAATACTGATGGACAAATACAGAAATCAGAGGATATCCATGCCCAAAAATTGAAAA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.agtttctgccttgtaaaaactgaattccacttgttcaccatttttattactgcagCAAGAGAGAGATCGTCTGTTGGCTGAAGTTGAAAACCGTGCTGCTAATTCTGATGGGCAAGCACAAAAATTGCAAGATATTCATGCCCAGAAATTAAAAA
tttttatt CT-rich tract
atttttattact TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaaataggagtttttgaacttctggagtttctgccttgtaaaaactgaattccacttgttcaccatttttattactgcagCAAGAGAGAGATCGTCTGTTGGCTGAAGTTGAAAACCGTGCTGCTAATTCTGATGGGCAAGCACAAAAATTGCAAGATATTCATGCCCAGAAATTAAAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA