1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...ttaatatcccatttatgtggatgttcataatgttctgttcttttgttattgttagtacctggaaaggttgcgtaagatcaatcaatgtttgatgaatcagGAAGCAATACTCTTGGATCTTCTCAGAGTTATCAGCCATCATCAAGCTCGCCTTGCAACACCCATTCGTACGGTTCAGAAAGAATACAGCATGGCTGACA
species | Vitis vinifera |
transcript | Vv18s0001g07500.t01 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: CTTTGTGTGAAG GAAGCAATACTCTTGGATCTTCTCAGAGTTATCAGCCATCATCAAGCTCGCEST: gi|32269593|gb|CD718752.1|CD718752
genomic: CTTTGTGTGAAGgtaattgcag ... gatgaatcagGAAGCAATACTCTTGGATCTTCTCAGAGTTATCAGCCATCATCAAGCTCGC
EST: TTTCATGCTTTGTGAAAACCCCACGTTTTGAAGAGTACCTTTGTGTGAAG GAAGCAATACTCTTGGATCTTCTCAGAGTTATCAGCCATCATCAAGCTCGCEST: gi|32249867|gb|CD715686.1|CD715686
genomic: TTTCATGCTTTGTGAAAACCCCACGTTTTGAAGAGTACCTTTGTGTGAAGgtaattgcag ... gatgaatcagGAAGCAATACTCTTGGATCTTCTCAGAGTTATCAGCCATCATCAAGCTCGC
EST: TTTCATGCTTTGTGAAAACCCCACGTTTTGAAGAGTACCTTTGTGTGAAG GAAGCAATACTCTTGGATCTTCTCAGAGTTATCAGCCATCATCAAGCTCGC
genomic: TTTCATGCTTTGTGAAAACCCCACGTTTTGAAGAGTACCTTTGTGTGAAGgtaattgcag ... gatgaatcagGAAGCAATACTCTTGGATCTTCTCAGAGTTATCAGCCATCATCAAGCTCGC
ttattgttagtacctggaaaggttgcgtaagatcaatcaatgtttgatgaatcagGAAGCAATACTCTTGGATCTTCTCAGAGTTATCAGCCATCATCAAGCTCGCCTTGCAACACCCATTCGTACGGTTCAGAAAGAATACAGCATGGCTGACA
gtttgat putative branch site (score: 5)
aatcaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttaatatcccatttatgtggatgttcataatgttctgttcttttgttattgttagtacctggaaaggttgcgtaagatcaatcaatgtttgatgaatcagGAAGCAATACTCTTGGATCTTCTCAGAGTTATCAGCCATCATCAAGCTCGCCTTGCAACACCCATTCGTACGGTTCAGAAAGAATACAGCATGGCTGACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - -cccattt
- - - - - - - - gtggatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - -tacctgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caatcaa