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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcacacatgttttacctgtggtttgggtttctaaaggttttatgttatggaaggcattttcagatactataatttaaataattcacttctattttacactttatcacctcagAAAGCATCTGCTAGCAGTGCAGCAATGGTTTCAGATTATGTCGGTTATCTTGAAAAGGGGCAAATCCCTCCCAAG

Basic information

species Vitis vinifera
transcript Vv18s0001g04980.t01
intron # 13
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0001g04980.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: GLYMA06G11120.1 (Glycine max), 3'ss of exon 12
gtaagcacacatgttttacctgtggtttgggtttctaaaggttttatgttatggaaggcattttcagatactataatttaaataattcacttctattttacactttatcacctcagAAAGCATCTGCTAGCAGTGCAGCAATGGTTTCAGATTATGTCGGTTATCTTGAAAAGGGGCAAATCCCTCCCAAG
||||||| || ||||||   | |  |||   | |||     ||||              | ||||| ||  |  |||| |  | |    |   | ||  |      || |   |||||||| |||||||||||||||||  |||||||||||||||| ||||||||||||||||| |||||||||||||||
gtaagca-acttgttttttatattcttt---tctcttggacttttgc-----------tagtttcatatggtggaattca--tgacctgcgcttcttcca------attaatacagAAAGCTTCTGCTAGCAGTGCAGCTTTGGTTTCAGATTATGTTGGTTATCTTGAAAAGGGACAAATCCCTCCCAAG

upper sequence: Vv18s0001g04980.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: GLYMA04G11550.1 (Glycine max), 3'ss of exon 12
gtaagcacacatgttttacctgtggtttgggtttctaaaggttttatgttatggaaggcattttcagatactataatttaaataattcacttctattttacactttatcacctcagAAAGCATCTGCTAGCAGTGCAGCAATGGTTTCAGATTATGTCGGTTATCTTGAAAAGGGGCAAATCCCTCCCAAG
||||||| || ||||||   | |  |||   | |||     |||| | |          | ||||| ||  |  |||| |      | || | |  ||  |    ||| |   |||||||| ||  |||||||||||||  |||||||||||||||| || |||||||||||||| |||||||||||||||
gtaagcaaacttgttttttatatccttt---tctctttgactttttttt----------agtttcatatggtggaattca------tgacctgtgctt--cttcctattaatgcagAAAGCTTCCACTAGCAGTGCAGCTTTGGTTTCAGATTATGTTGGCTATCTTGAAAAGGGACAAATCCCTCCCAAG

upper sequence: Vv18s0001g04980.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: AT1G36160.1 (Arabidopsis thaliana), 3'ss of exon 13
gtaagcacacatgttttacctgtggtttgggtttctaaaggttttatgttatggaaggcattttcagatact---ataatttaaataattcacttctatt----ttacactttatcacctcagAAAGCATCTGCTAGCAGTGCAGCAATGGTTTCAGATTATGTCGGTTATCTTGAAAAGGGGCAAATCCCTCCCAAG
                                                 || | |   | || ||||| | |    |   || || | ||    |||  |      |   | ||||    ||||||||||| || | |||||| ||  ||||||||||||| || |||||||| || ||||||||||||||||| |||
------------------------------------------------gtaagaacctctttctcagagatttatttgtcttgaaaagtttctatctggtgacgaaatgttctatctgtccagAAAGCATCAGCGACCAGTGCTGCTGTGGTTTCAGATTACGTTGGTTATCTGGAGAAGGGGCAAATCCCTCCAAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttcagatactataatttaaataattcacttctattttacactttatcacctcagAAAGCATCTGCTAGCAGTGCAGCAATGGTTTCAGATTATGTCGGTTATCTTGAAAAGGGGCAAATCCCTCCCAAG
                                         ctttatc  CT-rich tract
          tataatttaaataatt  TA-rich tract