Sequence
atgc intronic sequence ATGC exonic sequencegtaagctagaattttcttttgtttcaagaaaggattttcatagcttttttatgtcctctctactactttcaaatgtttttcttatttccttttgtttcttggggaaaattatacagTCTTCTCTGGGAAACACTAACAGGAAGAGAGCACCTGCTATTTTATGGAAGACTTAAAAACCTCAAAGGTGCTGCCTTAACACAA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv17s0000g05860.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: GLYMA06G20370.1 (Glycine max), 3'ss of exon 13
gtaagctagaattttcttttgtttcaagaaaggattttcatagcttttttatgtcctctctactact-ttcaaatgtttttcttatttccttttgtttcttggggaaaattatacagTCTTCTCTGGGAAACACTAACAGGAAGAGAGCACCTGCTATTTTATGGAAGACTTAAAAACCTCAAAGGTGCTGCCTTAACACAA
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gtaagctggaatttcctccaattt---atatggttttttaatgtaatatcaagttaaattcataacagttgagaaattttatatatattttttcttttatt-------atttta--gCTTGCTGTGGGAATCCCTAACAGGAAGAGAGCACCTACTCTTTTACGGCAGACTTAAAAATCTTAAAGGTTCAGCCTTAACACAA
upper sequence: Vv17s0000g05860.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: GLYMA04G34130.1 (Glycine max), 3'ss of exon 13
---------------------------------------gtaagctagaattttcttttgtttcaagaaaggattttcata-gcttttttatgtcctctctactactttcaaatgtttttcttatttccttttgtttcttggggaaaattatacagTCTTCTCTGGGAAACACTAACAGGAAGAGAGCACCTGCTATTTTATGGAAGACTTAAAAACCTCAAAGGTGCTGCCTTAACACAA
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gtaagctggaatttcctccaagttatatgttttttttatgtaatatt-aatttaaattcataacagtggagaaattatatatatatatatatatatatatatatatatatatatatttttttttttttttttttttttcttttattattt---tagCTTGCTGTGGGAATCCCTAACCGGAAGAGAGCACCTACTCTTTTATGGCAGACTTAAAAATCTTAAAGGTTCAGCCTTAACCCAA
upper sequence: Vv17s0000g05860.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: GLYMA17G10670.1 (Glycine max), 3'ss of exon 14
gtaagctagaattttcttttgtttcaagaaaggattttcatagcttttttatgtcctctctactactttcaaatgtttttcttatttccttttgtttcttggggaaaattatacagTCTTCTCTGGGAAACACTAACAGGAAGAGAGCACCTGCTATTTTATGGAAGACTTAAAAACCTCAAAGGTGCTGCCTTAACACAA
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gtaagctggaaaattcttctaattcatat-----tttttttttctttctaaaatcaaacctataactactaaaaaaatgttttctaacttaccattctcttt-----atactgtagCTTGCTGTGGGAAAGCTTGACAGGTAGAGAGCACCTACTTTTTTATGGCAGACTTAAAAATCTTAAAGGCTCACTCTTGACACAA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.actactttcaaatgtttttcttatttccttttgtttcttggggaaaattatacagTCTTCTCTGGGAAACACTAACAGGAAGAGAGCACCTGCTATTTTATGGAAGACTTAAAAACCTCAAAGGTGCTGCCTTAACACAA
tttcaaatgtttttct TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaagctagaattttcttttgtttcaagaaaggattttcatagcttttttatgtcctctctactactttcaaatgtttttcttatttccttttgtttcttggggaaaattatacagTCTTCTCTGGGAAACACTAACAGGAAGAGAGCACCTGCTATTTTATGGAAGACTTAAAAACCTCAAAGGTGCTGCCTTAACACAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC