Sequence
atgc intronic sequence ATGC exonic sequencegtatcttattttttaattatcttttgatacttctatgctttatcagcttttagttcgctatgtataaatattattctttggttttatcagGCTGTATACAGTGAGAGCAGAGACTCTCCTTTCATTTTGTTTATGAAAGATGCTGAGAAGTCTATTGTCGGAAATTCAGAGTCATATTCAATGTTTAAAA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv17s0000g01550.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: GLYMA05G03270.2 (Glycine max), 3'ss of exon 9
---gtatcttattttttaat-tatcttttgatacttctatgctttatcagcttttagttcgctatgtataaatattattctttggttttatcagGCTGTATACAGTGAGAGCAGAGACTCTCCTTTCATTTTGTTTATGAAAGATGCTGAGAAGTCTATTGTCGGAAATTCAGAGTCATATTCAATGTTTAAAA---
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gttgccatttaccctaccatgtagtctaagaatgttctgtaatcattttggcttcaatcttacaattagatttatactctgtttttttccccagGTTGTTTTTAGTGAGAGTAGAAGTGCACCATTCATTTTGTTCATGAAAGATGCTGAGAAGTCTATTGTAGGAAATGGAGATTCACATTCA---TTTAAAAGTA
upper sequence: Vv17s0000g01550.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: GLYMA17G13850.1 (Glycine max), 3'ss of exon 11
gtatcttatttttta----attatcttttgatacttctatgctttatcagcttttagttcgctatgtataaatattattctttggttttatcagGCTGTATACAGTGAGAGCAGAGACTCTCCTTTCATTTTGTTTATGAAAGATGCTGAGAAGTCTATTGTCGGAAATTCAGAGTCATATTCAATGTTTAAAA---
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gtgccatttaccctaccctgtagtctaagaatgctctacaatcattttggcttcaatcttacgat-tagatctatattcgggtattttttccagGTTGTTTTTAGTGAGAGTAGAAGTGCACCATTCATTTTGTTCATGAAAGATGCTGAGAAGTCTATTGTAGGAAATGGAGATTCACATTCA---TTTAAAAGTA
upper sequence: Vv17s0000g01550.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: GLYMA06G17940.1 (Glycine max), 3'ss of exon 13
-gtatcttattttttaattatcttttgatacttct--------atgctttatcagcttttagttcgctatgtataaatattattctttggttttatcagGCTGTATACAGTGAGAGCAGAGACTCTCCTTTCATTTTGTTTATGAAAGATGCTGAGAAGTCTATTGTCGGAAATTCAGAGTCATATTCAATGTTTAAAA---
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gttgcctttcactccactgatctaataaaagtttcctcaaatcatattatattgttcgttaatcttacaagaatttatacatctttttttccccttcagGTTGTGGTTAGTGAGAGCAGAAATGCACCTTTCATTTTGTTCATGAAAGATGCAGAGAAGTCTATAGTAGGAAATGGAGATCCATTTTCA---TTTAAAAGTAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|37185165|gb|CF604518.1|CF604518EST: ACACGGGTGTGGAAGATCTGGACAAGTTACTCATTAACACATTGTTTGAG GCTGTATACAGTGAGAGCAGAGACTCTCC
genomic: ACACGGGTGTGGAAGATCTGGACAAGTTACTCATTAACACATTGTTTGAGgtatcttatt ... gttttatcagGCTGTATACAGTGAGAGCAGAGACTCTCC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgctttatcagcttttagttcgctatgtataaatattattctttggttttatcagGCTGTATACAGTGAGAGCAGAGACTCTCCTTTCATTTTGTTTATGAAAGATGCTGAGAAGTCTATTGTCGGAAATTCAGAGTCATATTCAATGTTTAAAA
ttttatc CT-rich tract
tatgtataaatattat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatcttattttttaattatcttttgatacttctatgctttatcagcttttagttcgctatgtataaatattattctttggttttatcagGCTGTATACAGTGAGAGCAGAGACTCTCCTTTCATTTTGTTTATGAAAGATGCTGAGAAGTCTATTGTCGGAAATTCAGAGTCATATTCAATGTTTAAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT