Sequence
atgc intronic sequence ATGC exonic sequence...cagaatttctttcaggagtttcctttggtttggagactttagttactgacaacgaagaacattctttgattttttttgtggttaaatttctttctcttagGTGGTGCTCTAAAGCCAACTGATATTGAGACATTATGGGTTCATGTCACTTGTGCTTGGTTTCAACCTGAAGTTTCTTTCTCAAGTGATGAAAAGATGGA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv16s0098g00350.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: GLYMA19G17460.1 (Glycine max), 3'ss of exon 4
-cagaatttctttcaggagtttcctttggtttggagactttagttactgacaacgaagaacattctttgattttttttgtggttaaatttctttctcttagGTGGTGCTCTAAAGCCAACTGATATTGAGACATTATGGGTTCATGTCACTTGTGCTTGGTTTCAACCTGAAGTTTCTTTCTCAAGTGATGAAAAGATGGA
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tcatgatactagggagcagcttcggtaaattttttta-tatatatattttcattgttattaatgtctgtaatgttactctgaaaaatgatttgacacacagGTGGTGCTCTAAAGCCAACCGATGTTGACACATTATGGGTTCATGTTACTTGTGCTTGGTTTCGACCTGAAGTATCTTTTGCTAGTGATGAAAAGATGGA
upper sequence: Vv16s0098g00350.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: GLYMA06G13330.1 (Glycine max), 3'ss of exon 13
--------cagaatttctttcaggagtttcctttggtttggag--actttagttactgacaacgaagaacattctttgattttttttgtggttaaatttctttctcttagGTGGTGCTCTAAAGCCAACTGATATTGAGACATTATGGGTTCATGTCACTTGTGCTTGGTTTCAACCTGAAGTTTCTTTCTCAAGTGATGAAAAGATGGA
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ataaatgctcaagttattatcaaggagctctgcagatatgtttctaccttggtt-ttgatgactacaatc---------tttttctcctaaactatttttggactcccagGTGGTGCTCTAAAGCCGACTGATGTTGACACATTGTGGGTTCATGTCACTTGTGCTTGGTTTCGACCTGAAGTCTCTTTTGCTAGTGATGAGAAGATGGA
upper sequence: Vv16s0098g00350.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: GLYMA04G41500.1 (Glycine max), 3'ss of exon 13
---cagaatttc-----tttcaggagtttcctttggtttggag--actttagttactgacaacgaagaacattctttgattttttttgtggttaaatttctttctcttagGTGGTGCTCTAAAGCCAACTGATATTGAGACATTATGGGTTCATGTCACTTGTGCTTGGTTTCAACCTGAAGTTTCTTTCTCAAGTGATGAAAAGATGGA
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aaacaaagttttactattatcaaggagctctgctgacatgtttctaccttggtt-ttgatgacta-gaatattgttcgcttaaact--------atttttggactcccagGTGGTGCTTTAAAGCCGACAGATGTTGACACATTGTGGGTTCATGTCACTTGTGCTTGGTTTCGACCTGAAGTCTCTTTTGCTAGTGATGAGAAGATGGA
upper sequence: Vv16s0098g00350.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: AT5G53430.1 (Arabidopsis thaliana), 3'ss of exon 12
-------cagaatttctttcaggagtttcc--tttggtttggagacttta-gttactgacaacgaagaacattctttgattttt-tttgtggttaaatttctttctcttagGTGGTGCTCTAAAGCCAACTGATATTGAGACATTATGGGTTCATGTCACTTGTGCTTGGTTTCAACCTGAAGTTTCTTTCTCAAGTGATGAAAAGATGGA
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tattagctatcctttcccctcagatcttatagttttaccgagaaattttgcattgttgcccatcaactaaatttgccaatttttgtgtactgataaat-----------agGAGGTGCATTAAAGCCAACTGATGTGGAGACACTGTGGGTTCACGTGACATGTGCTTGGTTTCAGCCTGAAGTATGTTTTGCAAGTGAAGAAAAAATGGA
upper sequence: Vv16s0098g00350.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: AT4G27910.1 (Arabidopsis thaliana), 3'ss of exon 12
cagaatttctttcaggagtttc--ctttggtttggagactttag---ttactgacaacgaagaacattctttgattttttt-tgtggttaaatttctttctcttagGTGGTGCTCTAAAGCCAACTGATATTGAGACATTATGGGTTCATGTCACTTGTGCTTGGTTTCAACCTGAAGTTTCTTTCTCAAGTGATGAAAAGATGGA
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-gtggctttataaagtatattcagctttttcacataaacatatggcaccactgcctattaactatatccattggctccgctatgttgtca------ctgatgatagGAGGTGCATTGAAGCCAACTGATGTGGAAACGTTGTGGGTTCATGTGACATGTGCTTGGTTTCAGCCTGAAGTATGTTTTGCAAGTGAGGAAAAAATGGA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ctgacaacgaagaacattctttgattttttttgtggttaaatttctttctcttagGTGGTGCTCTAAAGCCAACTGATATTGAGACATTATGGGTTCATGTCACTTGTGCTTGGTTTCAACCTGAAGTTTCTTTCTCAAGTGATGAAAAGATGGA
tttctttctctt CT-rich tract
attttttttgtggtta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
cagaatttctttcaggagtttcctttggtttggagactttagttactgacaacgaagaacattctttgattttttttgtggttaaatttctttctcttagGTGGTGCTCTAAAGCCAACTGATATTGAGACATTATGGGTTCATGTCACTTGTGCTTGGTTTCAACCTGAAGTTTCTTTCTCAAGTGATGAAAAGATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - ggtttgg
- - - - - - - - - - - - - - - - - - - - - - -ctgacaa
- - - - - - - - - - - - - - - - - - - - - - - - - - -gaagaac