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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaccacgaattgtaaactgccttgcactgaaaaatcccctatcaaataatatgtactcagaaatatatttcactttttgctgggtgtatatacttttgggtgttttaactattttctgtttgctgggtttttctatttttaactaatctctttatcattcatcttattttgcagCGTTCTCATCAAAGCGTGTAGCTGTGAGCTCCCTATTGGCCGTTGGTGCTGTGCATCAGCATCTGGTTCAAAAGCTTGAGCGCACTCAGGTTGGGTTGAT

Basic information

species Vitis vinifera
transcript Vv16s0098g00290.t01
intron # 13
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv16s0098g00290.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: GLYMA19G16450.1 (Glycine max), 3'ss of exon 9
gtaccacgaattgtaaactgccttgcactgaaaaatcccctatcaaataatatgtactcagaaatatatttcactttttgctgggtgtatatacttttgggtgttttaactattttctgtttgctgggtttttctatttttaactaatctctttatcattcatcttattttgcagCGTTCTCATCAAAGCGTGTAGCTGTGAGCTCCCTATTGGCCGTTGGTGCTGTGCATCAGCATCTGGTTCAAAAGCTTGAGCGCACTCAGGTTGGGTTGAT
                                                                                           || |      ||||||   | | ||  | ||   |    ||| ||   | |||     |||   | |||  | |  | |   ||| ||||||   || ||  |  |||||||||||||  |||| ||||||||||| ||||||||||| ||| |||  ||||||||||||  |||||  |||||
------------------------------------------------------------------------------------------gtattgcactatgttttgcttgtatt--ggttaaagttactttttacagtgaacatccatctaatttatttgtatc-tgtgatagCCTTCTCAAAGAAACGCATCTCTGTGAGCTCCCTCCTGGCTGTTGGTGCTGTTCATCAGCATCTAGTTAAAACTCTTGAGCGCACTAGGGTTGCCTTGAT

upper sequence: Vv16s0098g00290.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: GLYMA14G32500.1 (Glycine max), 3'ss of exon 13
gtaccacgaattgtaaactgccttgcactgaaaaatcccctatcaaataatatgtactcagaaatatatttcactttttgctgggtgtatatacttttgggtgttttaactattttctgtttgctgggtttttctatttttaactaatctctttatcattcatcttattttgcagCGTTCTCATCAAAGCGTGTAGCTGTGAGCTCCCTATTGGCCGTTGGTGCTGTGCATCAGCATCTGGTTCAAAAGCTTGAGCGCACTCAGGTTGGGTTGAT
                                                                  |||| ||||  |       ||| | |  ||    || ||   | || || || ||| ||| |  | || || |  || | || | | | | ||| |  | |||    ||| ||||||   || ||||| ||||||||||||||  | || ||||||||||| ||||| ||||| ||| |||| ||||||||||||   ||||  || ||
-----------------------------------------------------------------gtattacactact------atgt-tgtgttt----gtattgctaatagttactttttactgtgcatgtccatct--aatttatttgtatgtgattgaa-tcatt----agCCTTCTCAAAGAAACGTGTTGCTGTGAGCTCCCTCCTTGCTGTTGGTGCTGTCCATCAACATCTTGTTAAAAATCTTGAGCGCACTAGAGTTGCCTTAAT

upper sequence: Vv16s0098g00290.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: GLYMA06G13280.2 (Glycine max), 3'ss of exon 13
gtaccacgaattgtaaactgccttgcactgaaaaatcccctatcaaataatatgtactcagaaatatatttcactttttgctgggtgtatatacttttgggtgttttaactattttctgtttgctgggtttttctatttttaactaatctctttatcattcatcttattttgcagCGTTCTCATCAAAGCGTGTAGCTGTGAGCTCCCTATTGGCCGTTGGTGCTGTGCATCAGCATCTGGTTCAAAAGCTTGAGCGCACTCAGGTTGGGTTGAT
                                                                                     | |||   ||| |   ||| ||   | | |  | | | |   |   ||| || |  || | || | ||| ||||  ||   || ||| ||| ||||||   || ||||| ||||||||||||||  |||| ||||||||||| ||||| ||||| ||  |||  |||||||| |||   ||||  ||  |
---------------------------------------------------------------------------------gtattatattatcttatacttgtattgtgtgtataatatatacactgcccttccatct--aattgatttgtttctcat--attgcatcttgtagCCTTCTCAAGGAAACGTGTTGCTGTGAGCTCCCTGCTGGCTGTTGGTGCTGTCCATCAACATCTAGTGAAAACACTTGAGCGTACTAGAGTTGCCTTAGT

upper sequence: Vv16s0098g00290.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: GLYMA04G41540.1 (Glycine max), 3'ss of exon 13
gtaccacgaattgtaaactgccttgcactgaaaaatcccctatcaaataatatgtactcagaaatatatttcactttttgctgggtgtatatacttttgggtgttttaactattttctgtttgctgggtttttctatttttaactaatctctttatcattcatcttattttgcagCGTTCTCATCAAAGCGTGTAGCTGTGAGCTCCCTATTGGCCGTTGGTGCTGTGCATCAGCATCTGGTTCAAAAGCTTGAGCGCACTCAGGTTGGGTTGAT
                                                                                   |   |||   ||| |   ||| ||   ||| |  | | | |   |   ||| ||||  || | || | | | ||||  ||   || ||| ||| ||||||   || ||||| ||||||||||||||  |||| ||||||||||| ||||| ||||| ||  |||  |||||||| |||   ||||  ||  |
-----------------------------------------------------------------------------------gtaatatcatcttgtacttgtattgtgtatataatatatacactgcacttccattt--aattgatttgtatctcat--attgcatcttgtagCTTTCTCAAGGAAACGTGTTGCTGTGAGCTCCCTGCTGGCTGTTGGTGCTGTCCATCAACATCTAGTGAAAACACTTGAGCGTACTAGAGTTGCCTTAGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgctgggtttttctatttttaactaatctctttatcattcatcttattttgcagCGTTCTCATCAAAGCGTGTAGCTGTGAGCTCCCTATTGGCCGTTGGTGCTGTGCATCAGCATCTGGTTCAAAAGCTTGAGCGCACTCAGGTTGGGTTGAT
                     aactaat  putative branch site (score: 2)
                                          tcttatttt  putative PPT
        tttttctatttttaac  TA-rich tract