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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagctttctatttatttgaatatctccttattttacttctcagaggtcgtgagcatcttttaaaaatatctgtgccagatcttatgccagattttgacctcatcaaagcatattttacttcttgcagATTCCAGGCAGAAATAGAGCTACCCTGCATAACAGCCCACATTTTCAGGTTGTGCCATATGCACATGCCAGTAGTTATGGCAGTTTAGGAAGCCATGGTA

Basic information

species Vitis vinifera
transcript Vv16s0039g00610.t01
intron # 13
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30304109|gb|CB980903.1|CB980903
EST:     ATCATCACCCAGGTGGAGGCCATTGGTTTGCTGCTGGTCTCTCTCCTAAC                         ATTCCAGGCGGAAATAGAGTTACCCTGCATAACAGCCCACATTTTCAGGTT
genomic: ATCATCACCCAGGTGGAGGCCATTGGTTTGCTGCTGGTCTCTCTCCTAACgtgagctttc ... cttcttgcagATTCCAGGCAGAAATAGAGCTACCCTGCATAACAGCCCACATTTTCAGGTT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgccagatcttatgccagattttgacctcatcaaagcatattttacttcttgcagATTCCAGGCAGAAATAGAGCTACCCTGCATAACAGCCCACATTTTCAGGTTGTGCCATATGCACATGCCAGTAGTTATGGCAGTTTAGGAAGCCATGGTA
                   ttttgac  putative branch site (score: 3)
                                        ttttacttctt  putative PPT
                                     atattttacttctt  TA-rich tract