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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aaaaaaaaaaaaattatttacacatgaagattggatggcacagatctttgatcatcctttgaattggaacttctgtactgactagtttatgattggccagGTGAATCAAATCGGTTCAGTAACTGAGAGCATTGAAGCTGTGAAAATGTCTAAACGAGCTGGCTGGGGTGTTATGGCAAGTCACCGAAG

Basic information

species Vitis vinifera
transcript Vv16s0022g01770.t01
intron # 13
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv16s0022g01770.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: LOC_Os06g04510.1 (Oryza sativa), 3'ss of exon 13
aaaaaaaaaaaaattatttacacatgaagattggatggcacagatctttgatcatcctttgaattggaacttc---tgtactgactagtttatgattggccagGTGAATCAAATCGGTTCAGTAACTGAGAGCATTGAAGCTGTGAAAATGTCTAAACGAGCTGGCTGGGGTGTTATGGCAAGTCACCGAAG
            ||| | | |   |  ||| | | | |  |   |  | |  |||    || | || ||  |    | |||   || ||||||| |  | |||||||||||||| || ||||| |||||||||||||| ||||| | |||||| || || ||||| ||||| || |||||||| ||  | ||
----------gtattgtatgc-tgttcagagttgctagttcttttgctaggacattgaatgtagtgcaatattgattataccatct-gtttatgct--gtcagGTGAATCAAATAGGCTCAGTTACTGAGAGCATTGAGGCTGTTAGAATGTCCAAGCGTGCTGGATGGGGAGTGATGGCAAGCCATAGGAG

upper sequence: Vv16s0022g01770.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: LOC_Os03g14450.2 (Oryza sativa), 3'ss of exon 10
aaaaaaaaaaaaattatttacacatgaagattggatggcacagatctttgatcatcctttgaattggaacttctgtactgactagtttatgattggccagGTGAATCAAATCGGTTCAGTAACTGAGAGCATTGAAGCTGTGAAAATGTCTAAACGAGCTGGCTGGGGTGTTATGGCAAGTCACCGAAG
              ||  |||   | ||| ||| ||   |   | |  |     |         |   | |  |||   |||  |||||| || |   |||| || ||||| || || || |||||||||||||| ||||| || ||||| ||||| |||||||||||||| ||| | |||||| | ||
-------------gtacatactgtttaaggttgtattcaaattagccatatcggtttgccagcgtaataatcttgt---gacctgtttat-atggtttagGTTAACCAAATTGGATCTGTTACTGAGAGCATTGAGGCTGTCAAGATGTCAAAACGTGCTGGCTGGGGTGTGATGACCAGTCACAGGAG

upper sequence: Vv16s0022g01770.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: GRMZM2G048371_T01 (Zea mays), 3'ss of exon 14
aaaaaaaaaaaaattatttacacatgaagattggatggcacagatctttgatcatcctttg-aattggaacttctgtac-tgactagtttatga----------ttggccagGTGAATCAAATCGGTTCAGTAACTGAGAGCATTGAAGCTGTGAAAATGTCTAAACGAGCTGGCTGGGGTGTTATGGCAAGTCACCGAAG
         ||| ||||   ||    |   ||| |||     |   ||  | || | ||   | ||   | ||| |||| |   |||||  | |          |||  ||||| || |||||||| || || |||||||| ||||| |||||||| ||||| || || || ||||||||||| ||| | |||||  | ||
-------gtaaacttatacccatccaaccgttgaatg-tgttgtctttgcaccagcattcatagttcacatttccgtacatatttagttatttatctttccatcttgtgcagGTTAACCAAATCGGATCTGTGACTGAGAGTATTGAGGCTGTGAAGATGTCAAAGCGTGCGGGCTGGGGTGTGATGACTAGTCATAGGAG

upper sequence: Vv16s0022g01770.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: GLYMA16G32960.1 (Glycine max), 3'ss of exon 13
--------------------------------aaaaaaaaaaaaattatttacacatgaaga-----ttggatggcacagatctttgatcatcctttgaattggaacttctgtactgactagtttatgattggccagGTGAATCAAATCGGTTCAGTAACTGAGAGCATTGAAGCTGTGAAAATGTCTAAACGAGCTGGCTGGGGTGTTATGGCAAGTCACCGAAG
                                 || |     || ||   |    || |        ||  ||   | | ||  |  |||| | | | |   ||||  | | |  |   |  ||||| |||    ||||||||||||| |||   |||||||| || ||||||||||||| ||||||||||| |||||| |||||||| ||||| || ||| | ||
gtaaattaacctttgccttcctgctagaggatcaagagtttgaagttccctgtttattagctattttttaaatctgaaaaattctctatcaac-tctaaccaggaaagtttttttttttttttttatcattt-ttagGTGAATCAAATTGGTAGTGTAACTGAAAGTATTGAAGCTGTGAGAATGTCTAAACAAGCTGGTTGGGGTGTCATGGCTAGCCACAGGAG

upper sequence: Vv16s0022g01770.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: GLYMA09G28100.1 (Glycine max), 3'ss of exon 13
--------------------------------aaaaaaaaaaaaattatttacacatgaagattggatggcacagatctttgatca---tcctttgaattggaacttctgta--ctgactagtttatgattg--gccagGTGAATCAAATCGGTTCAGTAACTGAGAGCATTGAAGCTGTGAAAATGTCTAAACGAGCTGGCTGGGGTGTTATGGCAAGTCACCGAAG
                                | || |   ||| |||      | ||   ||| | |       || | |||  |     || | || |  |||      |   | | |  ||||| ||    |  ||||||||||||| |||   |||||||| || ||||||||||||| ||||||||||| |||||| |||||||| ||||| || ||| | ||
gtaaattaacttttgccttcttttcatctgctagaagatcgaaagttaaagttccctgtttattagctattttttatatctgaaaaattctctatcaactctaacaaggaaagttttatttatttatcatcattgttagGTGAATCAAATTGGTAGTGTAACTGAAAGTATTGAAGCTGTGAGAATGTCTAAACAAGCTGGTTGGGGTGTCATGGCTAGCCACAGGAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30134221|gb|CB919559.1|CB919559
EST:     GTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG                         GTGAATCAAATCGGTTCAGTAACTGAGAGCATTGAAGCTGTGAAAATGTCT
genomic: GTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAGgtagttgtca ... gattggccagGTGAATCAAATCGGTTCAGTAACTGAGAGCATTGAAGCTGTGAAAATGTCT
EST: gi|29783193|gb|CB349213.2|CB349213
EST:     GTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG                         GTGAATCAAATCGGTTCAGTAACTGAGAGCATTGAAGCTGTGAAAATGTCT
genomic: GTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAGgtagttgtca ... gattggccagGTGAATCAAATCGGTTCAGTAACTGAGAGCATTGAAGCTGTGAAAATGTCT
EST: gi|110399162|gb|EC965655.1|EC965655
EST:     GTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG                         GTGAATCAAATCGGTTCAGTAACTGAGAGCATTGAAGCTGTGAAAATGTCT
genomic: GTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAGgtagttgtca ... gattggccagGTGAATCAAATCGGTTCAGTAACTGAGAGCATTGAAGCTGTGAAAATGTCT
EST: gi|71882930|gb|DT031985.1|DT031985
EST:     GAGAAGGCTTGCAATGCCCTTCTATTGAAG                         GTGAATCAAATCGGTTCAGTAACTGAGAGCATTGAAGCTGTGAAAATGTCT
genomic: GAGAAGGCTTGCAATGCCCTTCTATTGAAGgtagttgtca ... gattggccagGTGAATCAAATCGGTTCAGTAACTGAGAGCATTGAAGCTGTGAAAATGTCT
EST: gi|71890438|gb|DT039493.1|DT039493
EST:     GTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG                         GTGAATCAAATCGGTTCAGTAACTGAGAGCATTGAAGCTGTGAAAATGTCT
genomic: GTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAGgtagttgtca ... gattggccagGTGAATCAAATCGGTTCAGTAACTGAGAGCATTGAAGCTGTGAAAATGTCT
EST: gi|22009325|gb|BQ794359.1|BQ794359
EST:     GTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG                         GTGAATCAAATCGGTTCAGTAACTGAGAGCATTGAAGCTGTGAAAATGTCT
genomic: GTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAGgtagttgtca ... gattggccagGTGAATCAAATCGGTTCAGTAACTGAGAGCATTGAAGCTGTGAAAATGTCT
EST: gi|110716823|gb|EE092142.1|EE092142
EST:     GTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG                         GTGAATCAAATCGGTTCAGTAACTGAGAGCAATGAAGCTGTGAAAATGTCA
genomic: GTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAGgtagttgtca ... gattggccagGTGAATCAAATCGGTTCAGTAACTGAGAGCATTGAAGCTGTGAAAATGTCT
EST: gi|27586582|gb|CB009277.1|CB009277
EST:     GTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG                         GTGAATCAAATCGGTTCAGTAACTGAGAGCATTGAAGCTGTGAAAATGTCT
genomic: GTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAGgtagttgtca ... gattggccagGTGAATCAAATCGGTTCAGTAACTGAGAGCATTGAAGCTGTGAAAATGTCT
EST: gi|28968210|gb|CB347243.1|CB347243
EST:     GTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG                         GTGAATCAAATCGGTTCAGTAACTGAGAGCATTGAAGCTGTGAAAATGTCT
genomic: GTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAGgtagttgtca ... gattggccagGTGAATCAAATCGGTTCAGTAACTGAGAGCATTGAAGCTGTGAAAATGTCT
EST: gi|30297237|gb|CB974031.1|CB974031
EST:     GTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTTTATTGAAG                         GTGAATCAAATCGGTTCAGTAACTGAGAGCATTGAAGCTGTGAAAATGTCT
genomic: GTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAGgtagttgtca ... gattggccagGTGAATCAAATCGGTTCAGTAACTGAGAGCATTGAAGCTGTGAAAATGTCT
EST: gi|33408992|gb|CF214619.1|CF214619
EST:     GTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG                         GCGAATCAAATCGGTTCAGTAACTGAGAGCATTGAAGCTGTGAAAATGTCT
genomic: GTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAGgtagttgtca ... gattggccagGTGAATCAAATCGGTTCAGTAACTGAGAGCATTGAAGCTGTGAAAATGTCT
EST: gi|37184490|gb|CF603844.1|CF603844
EST:     GTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG                         GTGAATCAAATCGGTTCAGTAACTGAGAGCATTGAAGCTGTGAAAATGTCT
genomic: GTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAGgtagttgtca ... gattggccagGTGAATCAAATCGGTTCAGTAACTGAGAGCATTGAAGCTGTGAAAATGTCT
EST: gi|156732544|gb|EV236665.1|EV236665
EST:     GTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG                         GTGAATCAAATCGGTTCAGTAACTGAGAGCATTGAAGCTGTGAAAATGTCT
genomic: GTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAGgtagttgtca ... gattggccagGTGAATCAAATCGGTTCAGTAACTGAGAGCATTGAAGCTGTGAAAATGTCT
EST: gi|110408001|gb|EC973621.1|EC973621
EST:     GTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG                         GTGAATCAAATCGGTTCAGTAACTGAGAGCATTGAAGCTGTGAAAATGTCT
genomic: GTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAGgtagttgtca ... gattggccagGTGAATCAAATCGGTTCAGTAACTGAGAGCATTGAAGCTGTGAAAATGTCT
EST: gi|71866052|gb|DT015107.1|DT015107
EST:     GTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG                         GTGAATCAAATCGGTTCAGTAACTGAGAGCATTGAAGCTGTGAAAATGTCT
genomic: GTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAGgtagttgtca ... gattggccagGTGAATCAAATCGGTTCAGTAACTGAGAGCATTGAAGCTGTGAAAATGTCT
EST: gi|26267083|gb|CA818146.1|CA818146
EST:     GTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG                         GTGAATCAAATCGGTTCAGTAACTGAGAGCATTGAAGCTGTGAAAATGTCT
genomic: GTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAGgtagttgtca ... gattggccagGTGAATCAAATCGGTTCAGTAACTGAGAGCATTGAAGCTGTGAAAATGTCT
EST: gi|22008750|gb|BQ793784.1|BQ793784
EST:     GTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG                         GTGAATCAAATCGGTTCAGTAACTGAGAGCATTGAAGCTGTGAAAATGTCT
genomic: GTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAGgtagttgtca ... gattggccagGTGAATCAAATCGGTTCAGTAACTGAGAGCATTGAAGCTGTGAAAATGTCT
EST: gi|22010889|gb|BQ795923.1|BQ795923
EST:     GTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG                         GTGAATCAAATCGGTTCAGTAACTGAGAGCATTGAAGCTGTGAAAATGTCT
genomic: GTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAGgtagttgtca ... gattggccagGTGAATCAAATCGGTTCAGTAACTGAGAGCATTGAAGCTGTGAAAATGTCT
EST: gi|30297383|gb|CB974177.1|CB974177
EST:     GTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG                         GTGAATCAAATCGGTTCAGTAACTGAGAGCATTGAAGCTGTGAAAATGTCT
genomic: GTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAGgtagttgtca ... gattggccagGTGAATCAAATCGGTTCAGTAACTGAGAGCATTGAAGCTGTGAAAATGTCT
EST: gi|30126213|gb|CB911552.1|CB911552
EST:     GTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG                         GTGAATCAAATCGGTTCAGTAACTGAGAGCATTGAAGCTGTGAAAATGTCT
genomic: GTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAGgtagttgtca ... gattggccagGTGAATCAAATCGGTTCAGTAACTGAGAGCATTGAAGCTGTGAAAATGTCT
EST: gi|30297814|gb|CB974608.1|CB974608
EST:     GTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG                         GTGAATCAAATCGGTTCAGTAACTGAGAGCATTGAAGCTGTGAAAATGTCT
genomic: GTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAGgtagttgtca ... gattggccagGTGAATCAAATCGGTTCAGTAACTGAGAGCATTGAAGCTGTGAAAATGTCT
EST: gi|110720665|gb|EE096796.1|EE096796
EST:     GTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG                         GTGAATCAAATCGGTTCAGTAACTGAGAGCATTGAAGCTGTGAAAATGTCT
genomic: GTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAGgtagttgtca ... gattggccagGTGAATCAAATCGGTTCAGTAACTGAGAGCATTGAAGCTGTGAAAATGTCT
EST: gi|161719189|gb|FC069366.1|FC069366
EST:     GTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG                         GTGAATCAAATCGGTTCAGTAACTGAGAGCATTGAAGCTGTGAAAATGTCT
genomic: GTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAGgtagttgtca ... gattggccagGTGAATCAAATCGGTTCAGTAACTGAGAGCATTGAAGCTGTGAAAATGTCT
EST: gi|26266435|gb|CA817498.1|CA817498
EST:     GTGGGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG                         GTGAATCAAATCGGTTCAGTAACTGAGAGCATTGAAGCTGTGAAAATGTCT
genomic: GTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAGgtagttgtca ... gattggccagGTGAATCAAATCGGTTCAGTAACTGAGAGCATTGAAGCTGTGAAAATGTCT
EST: gi|110422151|gb|EC988464.1|EC988464
EST:     GTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG                         GTGAATCAAATCGGTTCAGTAACTGAGAGCATTGAAGCTGTGAAAATGTCT
genomic: GTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAGgtagttgtca ... gattggccagGTGAATCAAATCGGTTCAGTAACTGAGAGCATTGAAGCTGTGAAAATGTCT
EST: gi|110695109|gb|EE072750.1|EE072750
EST:     GTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG                         GTGAATCAAATCGGTTCAGTAACTGAGAGCATTGAAGCTGTGAAAATGTCT
genomic: GTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAGgtagttgtca ... gattggccagGTGAATCAAATCGGTTCAGTAACTGAGAGCATTGAAGCTGTGAAAATGTCT
EST: gi|110732424|gb|EE107698.1|EE107698
EST:     GCTTGCAATGCCCTTCTATTGAAG                         GTGAATCAAATCGGTTCAGTAACTGAGAGCATTGAAGCTGTGAAAATGTCT
genomic: GCTTGCAATGCCCTTCTATTGAAGgtagttgtca ... gattggccagGTGAATCAAATCGGTTCAGTAACTGAGAGCATTGAAGCTGTGAAAATGTCT
EST: gi|27585372|gb|CB008067.1|CB008067
EST:     GTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG                         GTGAATCAAATCGGTTCAGTAACTGAGAGCATTGAAGCTGTGAAAATGTCT
genomic: GTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAGgtagttgtca ... gattggccagGTGAATCAAATCGGTTCAGTAACTGAGAGCATTGAAGCTGTGAAAATGTCT
EST: gi|34543958|gb|CF512190.1|CF512190
EST:     GTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG                         GTGAATCAAATCGGTTCAGTAACTGAGAGCATTGAAGCTGTGAAAATGTCT
genomic: GTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAGgtagttgtca ... gattggccagGTGAATCAAATCGGTTCAGTAACTGAGAGCATTGAAGCTGTGAAAATGTCT
EST: gi|110405512|gb|EC971053.1|EC971053
EST:     GTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG                         GTGAATCAAATCGGTTCAGTAACTGAGAGCATTGAAGCTGTGAAAATGTCT
genomic: GTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAGgtagttgtca ... gattggccagGTGAATCAAATCGGTTCAGTAACTGAGAGCATTGAAGCTGTGAAAATGTCT
EST: gi|110700865|gb|EE077893.1|EE077893
EST:     GTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG                         GTGAATCAAATCGGTTCAGTAACTGAGAGCATTGAAGCTGTGAAAATGTCT
genomic: GTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAGgtagttgtca ... gattggccagGTGAATCAAATCGGTTCAGTAACTGAGAGCATTGAAGCTGTGAAAATGTCT
EST: gi|34548911|gb|CF517143.1|CF517143
EST:     GTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG                         GTGAATCAAATCGGTTCAGTAACTGAGAGCATTGAAGCTGTGAAAATGTCT
genomic: GTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAGgtagttgtca ... gattggccagGTGAATCAAATCGGTTCAGTAACTGAGAGCATTGAAGCTGTGAAAATGTCT
EST: gi|30131875|gb|CB917214.1|CB917214
EST:     GTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG                         GTGAATCAAATCGGTTCAGTAACTGAGAGCATTGAAGCTGTGAAAATGTCT
genomic: GTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAGgtagttgtca ... gattggccagGTGAATCAAATCGGTTCAGTAACTGAGAGCATTGAAGCTGTGAAAATGTCT
EST: gi|22008400|gb|BQ793434.1|BQ793434
EST:     GTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG                         GTGAATCAAATCGGTTCAGTAACTGAGAGCATTGAAGCTGTGAAAATGTCT
genomic: GTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAGgtagttgtca ... gattggccagGTGAATCAAATCGGTTCAGTAACTGAGAGCATTGAAGCTGTGAAAATGTCT
EST: gi|27584827|gb|CB007522.1|CB007522
EST:     GTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG                         GTGAATCAAATCGGTTCAGTAACTGAG
genomic: GTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAGgtagttgtca ... gattggccagGTGAATCAAATCGGTTCAGTAACTGAG
EST: gi|30301117|gb|CB977911.1|CB977911
EST:     GTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG                         GTGAATCAAATCGGTTCAGTAACTGAGAGCATTGAAGCTGTGAAAATGTCT
genomic: GTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAGgtagttgtca ... gattggccagGTGAATCAAATCGGTTCAGTAACTGAGAGCATTGAAGCTGTGAAAATGTCT
EST: gi|110715456|gb|EE093529.1|EE093529
EST:     GTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG                         GTGAATCANATCGGTTCAGTAACTGAGAGCATTGAAGCTGTGAAAATGTCT
genomic: GTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAGgtagttgtca ... gattggccagGTGAATCAAATCGGTTCAGTAACTGAGAGCATTGAAGCTGTGAAAATGTCT
EST: gi|30306141|gb|CB982935.1|CB982935
EST:     GTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG                         GTGAATCAAATCGGTTCAGTAACTGAGAGCATTGAAGCTGTGAAAATGTCT
genomic: GTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAGgtagttgtca ... gattggccagGTGAATCAAATCGGTTCAGTAACTGAGAGCATTGAAGCTGTGAAAATGTCT
EST: gi|30297175|gb|CB973969.1|CB973969
EST:     GTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG                         GTGAATCAAATCGGTTCAGTAACTGAGAGCATTGAAGCTGTGAAAATGTCT
genomic: GTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAGgtagttgtca ... gattggccagGTGAATCAAATCGGTTCAGTAACTGAGAGCATTGAAGCTGTGAAAATGTCT
EST: gi|30297322|gb|CB974116.1|CB974116
EST:     GTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG                         GTGAATCAAATCGGTTCAGTAACTGAGAGCATTGAAGCTGTGAAAATGTCT
genomic: GTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAGgtagttgtca ... gattggccagGTGAATCAAATCGGTTCAGTAACTGAGAGCATTGAAGCTGTGAAAATGTCT
EST: gi|22008176|gb|BQ793210.1|BQ793210
EST:     GTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG                         GTGAATCAAATCGGTTCAGTAACTGAGAGCATTGAAGCTGTGAAAATGTCT
genomic: GTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAGgtagttgtca ... gattggccagGTGAATCAAATCGGTTCAGTAACTGAGAGCATTGAAGCTGTGAAAATGTCT
EST: gi|32246234|gb|CD712053.1|CD712053
EST:     GTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG                         GTGAATCAAATCGGTTCAGTAACTGAGAGCATTGAAGCTGTGAAAATGTCT
genomic: GTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAGgtagttgtca ... gattggccagGTGAATCAAATCGGTTCAGTAACTGAGAGCATTGAAGCTGTGAAAATGTCT
EST: gi|46918466|gb|CN547795.1|CN547795
EST:     TGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTTCTATTGAAG                         GTGAATCAAATCGGTTCAGTAACTGAGAGCATTGAAGCTGTGAAAATGTCT
genomic: TGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCC-TTCTATTGAAGgtagttgtca ... gattggccagGTGAATCAAATCGGTTCAGTAACTGAGAGCATTGAAGCTGTGAAAATGTCT
EST: gi|30251837|gb|CB969570.1|CB969570
EST:     GTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG                         GTGAATCAAATCGGTTCAGTAACTGAGAGCATTGAAGCTGTGAAAATGTCT
genomic: GTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAGgtagttgtca ... gattggccagGTGAATCAAATCGGTTCAGTAACTGAGAGCATTGAAGCTGTGAAAATGTCT
EST: gi|30125536|gb|CB910875.1|CB910875
EST:     GTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG                         GTGAATCAAATCGGTTCAGTAACTGAGAGCATTGAAGCTGTGAAAATGTCT
genomic: GTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAGgtagttgtca ... gattggccagGTGAATCAAATCGGTTCAGTAACTGAGAGCATTGAAGCTGTGAAAATGTCT
EST: gi|71871681|gb|DT020736.1|DT020736
EST:     GTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG                         GTGAATCAAATCGGTTCAGTAACTGAGAGCATTGAAGCTGTGAAAATGTCT
genomic: GTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAGgtagttgtca ... gattggccagGTGAATCAAATCGGTTCAGTAACTGAGAGCATTGAAGCTGTGAAAATGTCT
EST: gi|30300973|gb|CB977767.1|CB977767
EST:     GTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTTTATTGAAG                         GTGAATCAAATCGGTTCAGTAACTGAGAGCATTGAAGCTGTGAAAATGTCT
genomic: GTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAGgtagttgtca ... gattggccagGTGAATCAAATCGGTTCAGTAACTGAGAGCATTGAAGCTGTGAAAATGTCT
EST: gi|71866289|gb|DT015344.1|DT015344
EST:     GTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG                         GTGAATCAAATCGGTTCAGTAACTGAGAGCATTGAAGCTGTGAAAATGTCT
genomic: GTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAGgtagttgtca ... gattggccagGTGAATCAAATCGGTTCAGTAACTGAGAGCATTGAAGCTGTGAAAATGTCT
EST: gi|110715384|gb|EE093369.1|EE093369
EST:     GTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG                         GTGAATCAAATCGGTTCAGTAACTGAGAGCATTGAAGCTGTGAAAATGTCT
genomic: GTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAGgtagttgtca ... gattggccagGTGAATCAAATCGGTTCAGTAACTGAGAGCATTGAAGCTGTGAAAATGTCT
EST: gi|34544046|gb|CF512278.1|CF512278
EST:     GTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG                         GTGAATCAAATCGGTTCAGTAACTGAGAGCATTGAAGCTGTGAAAATGTCT
genomic: GTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAGgtagttgtca ... gattggccagGTGAATCAAATCGGTTCAGTAACTGAGAGCATTGAAGCTGTGAAAATGTCT
EST: gi|46918435|gb|CN547764.1|CN547764
EST:     GTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG                         GTGAATCAAATCGGTTCAGTAACTGAGAGCATTGAAGCTGTGAAAATGTCT
genomic: GTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAGgtagttgtca ... gattggccagGTGAATCAAATCGGTTCAGTAACTGAGAGCATTGAAGCTGTGAAAATGTCT
EST: gi|29783151|gb|CB349136.2|CB349136
EST:     GTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG                         GTGAATCAAATCGGTTCAGTAACTGAGAGCATTGAAGCTGTGAAAATGTCT
genomic: GTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAGgtagttgtca ... gattggccagGTGAATCAAATCGGTTCAGTAACTGAGAGCATTGAAGCTGTGAAAATGTCT
EST: gi|32456833|gb|CD798007.1|CD798007
EST:     AGAAAGCAATCAAGGAGAAGGCTTGCAATGTGCCCTTCTATTGAAG                         GTGAATCAAATCGGTTCAGTAACTGAGAGCATTGAAGCTGTGAAAATGTCT
genomic: AGAAAGCAATCAAGGAGAAGGCTTGCAA--TGCCCTTCTATTGAAGgtagttgtca ... gattggccagGTGAATCAAATCGGTTCAGTAACTGAGAGCATTGAAGCTGTGAAAATGTCT
EST: gi|110429400|gb|EC995891.1|EC995891
EST:     ATGCCCTTCTATTGAAG                         GTGAATCAAATCGGTTCAGTAACTGAGAGCATTGAAGCTGTGAAAATGTCT
genomic: ATGCCCTTCTATTGAAGgtagttgtca ... gattggccagGTGAATCAAATCGGTTCAGTAACTGAGAGCATTGAAGCTGTGAAAATGTCT
EST: gi|30305158|gb|CB981952.1|CB981952
EST:     GTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG                         GTGAATCAAATCGGTTCAGTAACTGAGAGCATTGAAGCTGTGAAAATGTCT
genomic: GTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAGgtagttgtca ... gattggccagGTGAATCAAATCGGTTCAGTAACTGAGAGCATTGAAGCTGTGAAAATGTCT
EST: gi|77586013|gb|DV222103.1|DV222103
EST:     GTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG                         GTGAATCAAATCGGTTCAGTAACTGAGAGCATTGAAGCTGTGAAAATGTCT
genomic: GTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAGgtagttgtca ... gattggccagGTGAATCAAATCGGTTCAGTAACTGAGAGCATTGAAGCTGTGAAAATGTCT
EST: gi|110410205|gb|EC975883.1|EC975883
EST:     GTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG                         GTGAATCAAATCGGTTCAGTAACTGAGAGCATTGAAGCTGTGAAAATGTCT
genomic: GTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAGgtagttgtca ... gattggccagGTGAATCAAATCGGTTCAGTAACTGAGAGCATTGAAGCTGTGAAAATGTCT
EST: gi|110418381|gb|EC984529.1|EC984529
EST:     GTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG                         GTGAATCAAATCGGTTCAGTAACTGAGAGCATTGAAGCTGTGAAAATGTCT
genomic: GTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAGgtagttgtca ... gattggccagGTGAATCAAATCGGTTCAGTAACTGAGAGCATTGAAGCTGTGAAAATGTCT
EST: gi|26265143|gb|CA816206.1|CA816206
EST:     GTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG                         GTGAATCAAATCGGTTCAGTAACTGAGAGCATTGAAGCTGTGAAAATGTCT
genomic: GTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAGgtagttgtca ... gattggccagGTGAATCAAATCGGTTCAGTAACTGAGAGCATTGAAGCTGTGAAAATGTCT
EST: gi|32457822|gb|CD798996.1|CD798996
EST:     AGAAGGCTTGCAATGCCCTTCTATTGAAG                         GTGAATCAAAAATCGGTTCAGTAACTGAGAGCATTGAAGCTGTGAAAATGT
genomic: AGAAGGCTTGCAATGCCCTTCTATTGAAGgtagttgtca ... gattggccagGTGAATC--AAATCGGTTCAGTAACTGAGAGCATTGAAGCTGTGAAAATGT
EST: gi|110686170|gb|EE063531.1|EE063531
EST:     GTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG                         GTGAATCAAATCGGTTCAGTAACTGAGAGCATTGAAGCTGTGAAAATGTCT
genomic: GTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAGgtagttgtca ... gattggccagGTGAATCAAATCGGTTCAGTAACTGAGAGCATTGAAGCTGTGAAAATGTCT
EST: gi|30134791|gb|CB920129.1|CB920129
EST:     GTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG                         GTGAATCAAATCGGTTCAGTAACTGAGAGCATTGAAGCTGTGAAAATGTCT
genomic: GTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAGgtagttgtca ... gattggccagGTGAATCAAATCGGTTCAGTAACTGAGAGCATTGAAGCTGTGAAAATGTCT
EST: gi|34363639|gb|CF405224.1|CF405224
EST:     GTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG                         GTGAATCAAATCGGTTCAGTAACTGAGAGCATTGAAGCTGTGAAAATGTCT
genomic: GTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAGgtagttgtca ... gattggccagGTGAATCAAATCGGTTCAGTAACTGAGAGCATTGAAGCTGTGAAAATGTCT
EST: gi|71886270|gb|DT035325.1|DT035325
EST:     GTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG                         GTGAATCAAATCGGTTCAGTAACTGAGAGCATTGAAGCTGTGAAAATGTCT
genomic: GTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAGgtagttgtca ... gattggccagGTGAATCAAATCGGTTCAGTAACTGAGAGCATTGAAGCTGTGAAAATGTCT
EST: gi|110358476|gb|EC922715.1|EC922715
EST:     GTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG                         GTGAATCAAATCGGTTCAGTAACTGAGAGCATTGAAGCTGTGAAAATGTCT
genomic: GTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAGgtagttgtca ... gattggccagGTGAATCAAATCGGTTCAGTAACTGAGAGCATTGAAGCTGTGAAAATGTCT
EST: gi|83275978|gb|DV939986.1|DV939986
EST:     GTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG                         GTGAATCAAATCGGTTCAGTAACTGAGAGCATTGAAGCTGTGAAAATGTCT
genomic: GTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAGgtagttgtca ... gattggccagGTGAATCAAATCGGTTCAGTAACTGAGAGCATTGAAGCTGTGAAAATGTCT
EST: gi|161719251|gb|FC068252.1|FC068252
EST:     GTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG                         GTGAATCAAATCGGTTCAGTAACTGAGAGCATTGAAGCTGTGAAAATGTCT
genomic: GTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAGgtagttgtca ... gattggccagGTGAATCAAATCGGTTCAGTAACTGAGAGCATTGAAGCTGTGAAAATGTCT
EST: gi|110377559|gb|EC942632.1|EC942632
EST:     GTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG                         GTGAATCAAATCGGTTCAGTAACTGAGAGCATTGAAGCTGTGAAAATGTCT
genomic: GTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAGgtagttgtca ... gattggccagGTGAATCAAATCGGTTCAGTAACTGAGAGCATTGAAGCTGTGAAAATGTCT
EST: gi|110362047|gb|EC925554.1|EC925554
EST:     GTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG                         GTGAATCAAATCGGTTCAGTAACTGAGAGCATTGAAGCTGTGAAAATGTCT
genomic: GTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAGgtagttgtca ... gattggccagGTGAATCAAATCGGTTCAGTAACTGAGAGCATTGAAGCTGTGAAAATGTCT
EST: gi|30305842|gb|CB982636.1|CB982636
EST:     GTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG                         GTGAATCAAATCGGTTCAGTAACTGGGAGCATTGAAGCTGTGAAAATGTCT
genomic: GTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAGgtagttgtca ... gattggccagGTGAATCAAATCGGTTCAGTAACTGAGAGCATTGAAGCTGTGAAAATGTCT
EST: gi|30125009|gb|CB910348.1|CB910348
EST:     GTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAG                         GTGAATCAAATCGGTTCAGTAACTGAGAGCATTGAAGCTGTGAAAATGTCT
genomic: GTGTGGAGAAAGCAATCAAGGAGAAGGCTTGCAATGCCCTTCTATTGAAGgtagttgtca ... gattggccagGTGAATCAAATCGGTTCAGTAACTGAGAGCATTGAAGCTGTGAAAATGTCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctttgatcatcctttgaattggaacttctgtactgactagtttatgattggccagGTGAATCAAATCGGTTCAGTAACTGAGAGCATTGAAGCTGTGAAAATGTCTAAACGAGCTGGCTGGGGTGTTATGGCAAGTCACCGAAG
                              tactgac  putative branch site (score: 1)
                                        tttatgatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
aaaaaaaaaaaaattatttacacatgaagattggatggcacagatctttgatcatcctttgaattggaacttctgtactgactagtttatgattggccagGTGAATCAAATCGGTTCAGTAACTGAGAGCATTGAAGCTGTGAAAATGTCTAAACGAGCTGGCTGGGGTGTTATGGCAAGTCACCGAAG

aaaaaaa
- - - - - - - - - -acacatg
- - - - - - - - - - - - - - - -tggatgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acttctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tactgac