Sequence
atgc intronic sequence ATGC exonic sequencegtgatatgctaaagatttttgtctgcataggaactgatgcaccatatttctaagtaatgtccattttttatttaaaataagtttgtttggaaatgaactaatgcaccatattgggtaatgtctacttttttatttaaaatttgtttcacttatgcagGATGCTACTTCTGAAAATAAATTGCGTCTGTTGATGATATATGCTTCCGTTTATCCTGAGAAGTTTGAAGGTGACAAAGGTTTAAAGCTAATGCAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv15s0048g00970.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: LOC_Os06g04450.2 (Oryza sativa), 3'ss of exon 14
gtgatatgctaaagatttttgtctgcataggaactgatgcaccatatttctaagtaatgtccattttttatttaaaataagtttgtttggaaatgaactaa-tgcaccatattgggtaatgtctacttttttatttaaaatttgtttcacttatgcagGATGCTACTTCTGAAAATAAATTGCGTCTGTTGATGATATATGCTTCCGTTTATCCTGAGAAGTTTGAAGGTGACAAAGGTTTAAAGCTAATGCAG
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-----------------------------------------------------------------gtttgttaagaaagaga--gaatgaaagcagtcttactgctaattatttgtcagtttttattcaatgcttactgaact--ttctattgttcagGATATGAGCCCAGAAAACAAATTGAGGTTGCTTATTATATATGCAATTGTATATCCAGAGAAGTTTGAAGGTGACAAAGGGGAAAAGTTGATGCAG
upper sequence: Vv15s0048g00970.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: GRMZM5G830776_T01 (Zea mays), 3'ss of exon 14
gtgatatgctaaagatttttgtctgcataggaactgatgcaccatatttctaagtaatgtccattttttatttaaaataagtttgtttggaaatgaactaatgcaccatattgggtaatgtctacttttttatttaaaa--tttgtttcacttatgcagGATGCTACTTCTGAAAATAAATTGCGTCTGTTGATGATATATGCTTCCGTTTATCCTGAGAAGTTTGAAGGTGACAAAGGTTTAAAGCTAATGCAG
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-----------------------------------------------------------------gtttgtatagaaagagaaacaaaaaaacaggcttgctgctaagttgctgtcgttttgtttttctttgcttgacatgtttgttcca-ttattaagGATATGAGCCCAGAAAACAAAATGAGGTTGCTGATTATATATGCAATTGTATATCCAGAGAAGTTTGAAGGTGACAAAGGGGAAAAGTTGATGCAG
upper sequence: Vv15s0048g00970.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: GLYMA01G34340.1 (Glycine max), 3'ss of exon 9
gtgatatgctaaagatttttgtctgcataggaactgatgcaccatatttctaagtaatgtccattttttatttaaaataagtttgtttggaaatgaactaatgcaccatattgggtaatgtctacttttttatttaaaatttgtttcacttatgcagGATGCTACTTCTGAAAATAAATTGCGTCTGTTGATGATATATGCTTCCGTTTATCCTGAGAAGTTTGAAGGTGACAAAGGTTTAAAGCTAATGCAG
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--------------------------------------------------------------gtgttgaactaaaaacacat--atctgaatagtcaatattattttattttgaaca-------ctttgtttattaaaatttgtgt-gcccatgcagAACACGTCTCCTGAATATAAGTTGCGTTTGTTGATGATTTATGCATCTGTCTATCCTGAAAAGTTTGAGGGTGATAAAGCTTCAAAGCTAATGCAG
upper sequence: Vv15s0048g00970.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: GLYMA03G02740.1 (Glycine max), 3'ss of exon 14
gtgatatgctaaagatttttgtctgcataggaactgatgcaccatatttctaagtaatgtccattttttatttaaaataagtttgtttggaaatgaactaatgcaccatattgggta----atgtctacttttttatttaaaatttgtttcacttatgcagGATGCTACTTCTGAAAATAAATTGCGTCTGTTGATGATATATGCTTCCGTTTATCCTGAGAAGTTTGAAGGTGACAAAGGTTTAAAGCTAATGCAG
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--------------------------------------------------------------gtcttgaactgaagacacat--atctgaatagttagtattattttattctgagcacacaataaacactttctttgttaaaatttgtgt-gcacatgcagAATACGACTCCTGAATATAAGTTGCGTTTGTTGATGATTTATGCATCTGTCTATCCTGAAAAGTTTGAGGGTGATAAAGCTTCAAAACTAATGCAG
upper sequence: Vv15s0048g00970.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: AT1G02010.1 (Arabidopsis thaliana), 3'ss of exon 14
gtgatatgctaaagatttttgtctgcataggaactgatgcaccatatttctaagtaatgtccattttttatttaaaataagtttgtttggaaatgaactaatgcaccatattgg--gtaatg-tctacttttttatttaaaatttgtttcactta---tgcagGATGCTACTTCTGAAAATAAATTGCGTCTGTTGATGATATATGCTTCCGTTTATCCTGAGAAGTTTGAAGGTGACAAAGGTTTAAAGCTAATGCAG
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----------------------------------------------------------------------------gtgaataagtttgaaacatgacaaaaaaaacttgatagccgcattgatttagtgtttgaaatgacacatcatgtatttaaaatgcagGACACAAACCCGGAAAACAAATTACGGCTTTTGATGATTTATGCAACAGTGTACCCCGAGAAGTTTGAAGGTGACAAGGGTGTGAAGCTAATGCAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gcaccatattgggtaatgtctacttttttatttaaaatttgtttcacttatgcagGATGCTACTTCTGAAAATAAATTGCGTCTGTTGATGATATATGCTTCCGTTTATCCTGAGAAGTTTGAAGGTGACAAAGGTTTAAAGCTAATGCAG
tttcactt CT-rich tract
taatgtctactttttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgatatgctaaagatttttgtctgcataggaactgatgcaccatatttctaagtaatgtccattttttatttaaaataagtttgtttggaaatgaactaatgcaccatattgggtaatgtctacttttttatttaaaatttgtttcacttatgcagGATGCTACTTCTGAAAATAAATTGCGTCTGTTGATGATATATGCTTCCGTTTATCCTGAGAAGTTTGAAGGTGACAAAGGTTTAAAGCTAATGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG