Sequence
atgc intronic sequence ATGC exonic sequencegtctgcatcatttttagctctttacttcttgaacatatccagattccctcatgatactaaatatgggttcttttcatcaccattgatttattgctttgtgacaatttggaatagGATCTTGATTCGCGGTGTGAGGAACTAATCAAAGAAGAGTTTGGGGAGGACTGTAATTTTGATGTGGATGATGCTGTTCAAAAGTTAGAGAAGTTAGGCA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv14s0068g01000.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: GRMZM2G011136_T01 (Zea mays), 3'ss of exon 13
gtctgcatcatttttagctctttacttcttgaacatatcca-gattccctcatgatactaaatatgggttcttttcatcaccattgatttattgctttgtgacaatttggaatagGATCTTGATTCGCGGTGTGAGGAACTAATCAAAGAAGAGTTTGGGGAGGACTGTAATTTTGATGTGGATGATGCTGTTCAAAAGTTAGAGAAGTTAGGCA
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-----ctttgtttaaatgtttataagtcaaaactccacctatgagcgttttatcgttttaataac-----cttgaaatttagagagcttcatttttttt-----gttcctaccagGATCTTGATTTACGGTGTGAAGAGCTAATCAAAGAAGAGTTTGGCGCAGATTGCAATTTTGATGTTCATGATGCTATAAAGAAGTTAGAGAAGCTTAGCA
upper sequence: Vv14s0068g01000.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: GLYMA16G05180.1 (Glycine max), 3'ss of exon 13
---------------------------------gtctgc-atcatttttagctctttacttcttgaacatatccagatt--ccctcatgatactaaatatgggttcttttcatcaccattg----------attta---ttgctttgtgacaatttggaatagGATCTTGATTCGCGGTGTGAGGAACTAATCAAAGAAGAGTTTGGGGAGGACTGTAATTTTGATGTGGATGATGCTGTTCAAAAGTTAGAGAAGTTAGGCA
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gtatatccatgagcataagtttttagaaacttattttgctgttctctatgccatctttcttatttagaaattctattttgtacttagaaaaacaaggtttctatcatcatcatcatcatcattatctaagcacttatattagctgtttgattatatggatcagGATCTTGATCAATGGTGTGAGGAACTAATCAAAGAAGAGTTTGATGAGGAATGTAATTTTGATGTGGATGATGCTGTTGAGAAATTAGAGAAATTAGGAA
upper sequence: Vv14s0068g01000.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: GLYMA02G07370.1 (Glycine max), 3'ss of exon 13
--------gtctgcatcatttttagctctttacttcttgaacatatccagattccctcatgatactaaatatgggttcttttcatca--ccattgat-ttattgctttgtgacaatttggaatagGATCTTGATTCGCGGTGTGAGGAACTAATCAAAGAAGAGTTTGGGGAGGACTGTAATTTTGATGTGGATGATGCTGTTCAAAAGTTAGAGAAGTTAGGCA
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gtatgtacatcaatatcaattgaggaatattgtttcctttataattttgcaattctaacttatggttaggaaacgtttgtcacatctactcattcatataagctatatatggtaatgcgaatcagGAGCTCGATCAATGGTGTGAGGAGTTAATCAGAGAAGAGTTTGGGGAGAGCTGTAATTTTGACGTGGATGATGCAGTTCAAAAATTAGAGAAGTTCGGAA
upper sequence: Vv14s0068g01000.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: GLYMA16G26360.1 (Glycine max), 3'ss of exon 13
--------gtctgcatcatttt--tagctctttacttcttgaacatatccagattccctcatgatactaaatatgggttcttttcatc--accattgatttattgctttgtgacaatttggaatagGATCTTGATTCGCGGTGTGAGGAACTAATCAAAGAAGAGTTTGGGGAGGACTGTAATTTTGATGTGGATGATGCTGTTCAAAAGTTAGAGAAGTTAGGCA
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gtatgtacatcaatatcaatttagcaaatattgttttctttataattttgcaattctaactt-atggttaggaaaagtttgtcacatctactcattcatataa-gctatatatggatgtgaatcagGAACTCGATCAATGGTGCGAGGAGCTAATCAGAGAAGAGTTTGGAGAGAGCTGTAATTTTGACGTGGATGATGCAGTTAAGAAATTAGAGAAGTTCGGAA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aatatgggttcttttcatcaccattgatttattgctttgtgacaatttggaatagGATCTTGATTCGCGGTGTGAGGAACTAATCAAAGAAGAGTTTGGGGAGGACTGTAATTTTGATGTGGATGATGCTGTTCAAAAGTTAGAGAAGTTAGGCA
attgatttatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtctgcatcatttttagctctttacttcttgaacatatccagattccctcatgatactaaatatgggttcttttcatcaccattgatttattgctttgtgacaatttggaatagGATCTTGATTCGCGGTGTGAGGAACTAATCAAAGAAGAGTTTGGGGAGGACTGTAATTTTGATGTGGATGATGCTGTTCAAAAGTTAGAGAAGTTAGGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT