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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactgctaacttgcttagttgactcctctctatggatgcaatatttttaataactaatctttttgtgcagGCTGCTTGTTCATTATCACTTGGTTTTGGAGAGGATTCAATCAATGCATCAGCTGGTCTTGTGATGCCCATGGTGTCATCAAAGATAACTGGGTTCAGAG

Basic information

species Vitis vinifera
transcript Vv14s0068g00780.t01
intron # 13
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0068g00780.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: GLYMA02G07510.2 (Glycine max), 3'ss of exon 14
---------------gtactgctaacttgcttagttgactcctctctatg-gatgcaatatttttaat---aactaatctttttgt--------gcagGCTGCTTGTTCATTATCACTTGGTTTTGGAGAGGATTCAATCAATGCATCAGCTGGTCTTGTGATGCCCATGGTGTCATCAAAGATAACTGGGTTCAGAG
               | | |   |     |  |  ||   || ||   |  ||||  | |||   |||   | ||    | ||| |        |||| || ||||| |||| || ||||||||||| |||||| | |||||||||||| | | |||||||||||| ||| ||||||| |  || ||||| |||||||
gtattattactagttgcattaacattcgtcgcaaatggtgccacttgttatgatgataaattgacaattcaagcttgcttctttctatctctttgcagACTACTTGTGCATTGTCTCTTGGTTTTGGGGAGGATACCATCAATGCATCATCAGTTCTTGTGATGCCAATGATGTCATCGAGAATGACTGGATTCAGAG

upper sequence: Vv14s0068g00780.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: GLYMA16G26550.1 (Glycine max), 3'ss of exon 14
------------gtactgctaacttgcttagt---tgactcctctctatg-gatgcaatatttttaat---aactaatctttttgt--------gcagGCTGCTTGTTCATTATCACTTGGTTTTGGAGAGGATTCAATCAATGCATCAGCTGGTCTTGTGATGCCCATGGTGTCATCAAAGATAACTGGGTTCAGAG
            ||     |||| | ||| |    ||   || ||   |  ||||  | |||   |||   | ||    | ||| |        |||| || ||||| |||| || ||||||||||| |||||| | |||||  ||||| | | |||||||||||| ||| |||||||||  || ||||| |||||||
gtattattcctagttgcattaacattctttgcgaatggtgccacttgttatgatgataaattgacaattcaagcttgcttctttctatctctttgcagACTTCTTGTGCATTGTCTCTTGGTTTTGGGGAGGATACCATCAACACATCATCGGTTCTTGTGATGCCAATGATGTCATCAAGAATGACTGGATTCAGAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30127361|gb|CB912700.1|CB912700
EST:     GTCAAGGCAAAG                         GCTGCTTGTTCATTATCACTTGGTTTTGGAGAGGATTCAATCAATGCATCA
genomic: GTCAAGGCAAAGgtactgctaa ... ttttgtgcagGCTGCTTGTTCATTATCACTTGGTTTTGGAGAGGATTCAATCAATGCATCA
EST: gi|22008856|gb|BQ793890.1|BQ793890
EST:     GTATGCAAGCAATGCTAATGAAGGCTACAGAAGCGATAGTCAAGGCAAAG                         GCTGCTTGTTCATTATCACTTGGTTTTGGAGAGGATTCAATCAATGCATCA
genomic: GTATGCAAGCAATGCTAATGAAGGCTACAGAAGCGATAGTCAAGGCAAAGgtactgctaa ... ttttgtgcagGCTGCTTGTTCATTATCACTTGGTTTTGGAGAGGATTCAATCAATGCATCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tagttgactcctctctatggatgcaatatttttaataactaatctttttgtgcagGCTGCTTGTTCATTATCACTTGGTTTTGGAGAGGATTCAATCAATGCATCAGCTGGTCTTGTGATGCCCATGGTGTCATCAAAGATAACTGGGTTCAGAG
                                          tctttttgt  CT-rich tract
                    atgcaatatttttaat  TA-rich tract