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gtgcttgatcacatgcattatgattccctttcagtccacatgtcacttttaagttaataactagaatggtcttcgtggtcagGTTGCCGTTACAGAAATTTTGGATGGTGGTAGATTCTATATCCAACCAGTTGGAGAACAGAAAGTTGCCTCTATCGAGCAGCAACTCGCGTCATTGAATC
species | Vitis vinifera |
transcript | Vv14s0068g00720.t01 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: TTGCTAATGCTTCAGGCACTGAGAACAGCAGACAGAAAGAAGTACTCCAG GTTGCCGTTACAGAAATTTTGGATGGTGGTAGATTCTATATCCAACCAGTTEST: gi|110381283|gb|EC946607.1|EC946607
genomic: TTGCTAATGCTTCAGGCACTGAGAACAGCAGACAGAAAGAAGTACTCCAGgtgcttgatc ... tcgtggtcagGTTGCCGTTACAGAAATTTTGGATGGTGGTAGATTCTATATCCAACCAGTT
EST: AACAGCAGACAGAAAGAAGTACTCCAG GTTGCCGTTACAGAAATTTTGGATGGTGGTAGATTCTATATCCAACCAGTTEST: gi|161721331|gb|FC070058.1|FC070058
genomic: AACAGCAGACAGAAAGAAGTACTCCAGgtgcttgatc ... tcgtggtcagGTTGCCGTTACAGAAATTTTGGATGGTGGTAGATTCTATATCCAACCAGTT
EST: TTGCTAATGCTTCAGGCACTGAAAACAGCAGACAGAAAGAAGTACTCCAG GTTGCCGTTACAGAAATTTTGGATGGTGGTAGATTCTATATCCAACCAGTTEST: gi|110731966|gb|EE106841.1|EE106841
genomic: TTGCTAATGCTTCAGGCACTGAGAACAGCAGACAGAAAGAAGTACTCCAGgtgcttgatc ... tcgtggtcagGTTGCCGTTACAGAAATTTTGGATGGTGGTAGATTCTATATCCAACCAGTT
EST: TTGCTAATGCTTCAGGCACTGAAAACAGCAGACAGAAAGAAGTACTCCAG GTTGCCGTTACAGAAATTTTGGATGGTGGTAGATTCTATATCCAACCAGTTEST: gi|30304038|gb|CB980832.1|CB980832
genomic: TTGCTAATGCTTCAGGCACTGAGAACAGCAGACAGAAAGAAGTACTCCAGgtgcttgatc ... tcgtggtcagGTTGCCGTTACAGAAATTTTGGATGGTGGTAGATTCTATATCCAACCAGTT
EST: TTGCTAATGCTTCAGGCACTGAAAACAGCAGACAGAAAGAAGTACTCCAG GTTGCCGTTACAGAAATTTTGGATGGTGGTAGATTCTATATCCAACCAGTTEST: gi|71857364|gb|DT006419.1|DT006419
genomic: TTGCTAATGCTTCAGGCACTGAGAACAGCAGACAGAAAGAAGTACTCCAGgtgcttgatc ... tcgtggtcagGTTGCCGTTACAGAAATTTTGGATGGTGGTAGATTCTATATCCAACCAGTT
EST: TTGCTAATGCTTCAGGCACTGAAAACAGCAGACAGAAAGAAGTACTCCAG GTTGCCGTTACAGAAATTTTGGATGGTGGTAGATTCTATATCCAACCAGTTEST: gi|30304101|gb|CB980895.1|CB980895
genomic: TTGCTAATGCTTCAGGCACTGAGAACAGCAGACAGAAAGAAGTACTCCAGgtgcttgatc ... tcgtggtcagGTTGCCGTTACAGAAATTTTGGATGGTGGTAGATTCTATATCCAACCAGTT
EST: TTGCTAATGCTTCAGGCACTGAAAACAGCAGACAGAAAGAAGTACTCCAG GTTGCCGTTACAGAAATTTTGGATGGTGGTAGATTCTATATCCAACCAGTT
genomic: TTGCTAATGCTTCAGGCACTGAGAACAGCAGACAGAAAGAAGTACTCCAGgtgcttgatc ... tcgtggtcagGTTGCCGTTACAGAAATTTTGGATGGTGGTAGATTCTATATCCAACCAGTT
ctttcagtccacatgtcacttttaagttaataactagaatggtcttcgtggtcagGTTGCCGTTACAGAAATTTTGGATGGTGGTAGATTCTATATCCAACCAGTTGGAGAACAGAAAGTTGCCTCTATCGAGCAGCAACTCGCGTCATTGAATC
taataac putative branch site (score: 1)
tcttcgt putative PPT
ttttaagttaataact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcttgatcacatgcattatgattccctttcagtccacatgtcacttttaagttaataactagaatggtcttcgtggtcagGTTGCCGTTACAGAAATTTTGGATGGTGGTAGATTCTATATCCAACCAGTTGGAGAACAGAAAGTTGCCTCTATCGAGCAGCAACTCGCGTCATTGAATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG