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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtgaataacctttaaattcccaaatgtaaatagaaattttacttgtcttctacttacgtagtttatatggtcttcttcttgcttttagATTGCTTTCATGTGTGACTGAGCATCTAACTGCAGAGATAGTTCAACTAACTGTCTCTGACATTGCAAGGGCTATTGAATGGATGAAGTGCTCATACTTG

Basic information

species Vitis vinifera
transcript Vv14s0066g00880.t01
intron # 13
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0066g00880.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: GLYMA16G07850.1 (Glycine max), 3'ss of exon 13
--------------------gtaagtgaataacctttaaattcccaaatgtaaatagaaattttacttgtcttctac--ttacgtagtttatatggtc--ttcttcttgcttttagATTGCTTTCATGTGTGACTGAGCATCTAACTGCAGAGATAGTTCAACTAACTGTCTCTGACATTGCAAGGGCTATTGAATGGATGAAGTGCTCATACTTG
                     |    |||||   || | ||     |||  |     || || | |  |  || | |  ||||   ||| | ||  ||  |  ||  |     ||||||||| ||||||||||| |||||| ||  ||| || ||||||||||| || || ||||| ||| |||  || ||||||||| ||||  |||| ||||||
gtaagactgcctctttctaaattgtagaatagatttcacatctttgaata-atgcttaagttctgcaagcattgtgcatttaccctgttcacataatcaatgtttgcttaccatagATTGCTGTCATGTGTGACGGAGCATTTACTTGCGGAAATAGTTCAACTGACAGTATCTGATATTACAAAAGCAATTGAATGGCTGAAACGCTCCTACTTG

upper sequence: Vv14s0066g00880.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: AT3G27730.1 (Arabidopsis thaliana), 3'ss of exon 13
gtaagtgaataacctttaaattcccaaatgtaaa------tagaaattttacttgtcttct---acttacgtagttt-----atatggtcttcttcttgcttt----tagATTGCTTTCATGTGTGACTGAGCATCTAACTGCAGAGATAGTTCAACTAACTGTCTCTGACATTGCAAGGGCTATTGAATGGATGAAGTGCTCATACTTG
|||||| | |  ||  |||| | |    | |  |      |      ||||    |||| |   |  || || |  |     | ||  ||||||  ||  |||     ||||||||  ||||  | |  ||||| ||||| ||||| ||||| ||||| ||| ||||||||||| || |||| ||||| |||||||||||||||||| ||
gtaagt-attgcccaataaacttctttttttggaaccctttgctttctttaacattcttttaaaagctatgttggcttcaagaaatattcttctatttattttgttccagATTGCTGCCATGCTTAATAGAGCACCTAACCGCAGAAATAGTGCAACTTACTATCTCTGACATTACACGGGCAATTGAGTGGATGAAGTGCTCATACCTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaattttacttgtcttctacttacgtagtttatatggtcttcttcttgcttttagATTGCTTTCATGTGTGACTGAGCATCTAACTGCAGAGATAGTTCAACTAACTGTCTCTGACATTGCAAGGGCTATTGAATGGATGAAGTGCTCATACTTG
                 tacttac  putative branch site (score: 1)
                                     tcttcttcttgctttt  putative PPT
                         tagtttatat  TA-rich tract