1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...ttgttggtgactgtcaactattctttttctctttttatgttcaaagcagacttagattacgtgaaatatattatattttcctttttgtgacttaaaacagGCTGTAGAGGCAATGGACCGAAATCGAGTCTGTACAGAGTACTGGAACTCTCGTCCCTTGATTGCACAACATTCTCAATTAGAAGGTAGTGTTGGAAACC
species | Vitis vinifera |
transcript | Vv14s0036g00570.t01 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: GTCTTGATGGCCTAGAAATGTTTGGTTTTTCTTCACCCACAATCATGCAG GCTGTAGAGGCAATGGACCGAAATCGAGTCTGTACAGAGTACTGGAACTCTEST: gi|56408484|gb|CX016736.1|CX016736
genomic: GTCTTGATGGCCTAGAAATGTTTGGTTTTTCTTCACCCACAATCATGCAGgtaaacctac ... cttaaaacagGCTGTAGAGGCAATGGACCGAAATCGAGTCTGTACAGAGTACTGGAACTCT
EST: GTCTTGATGGCCTAGAAATGTTTGGTTTTTCTTCACCCACAATCATGCAN GCTGTAGAGGCAATGGACCGAAATCGAGTCTGTACAGAEST: gi|56408652|gb|CX016904.1|CX016904
genomic: GTCTTGATGGCCTAGAAATGTTTGGTTTTTCTTCACCCACAATCATGCAGgtaaacctac ... cttaaaacagGCTGTAGAGGCAATGGACCGAAATCGAGTCTGTACAGA
EST: GTCTTGATGGCCTAGAAATGTTTGGTTTTTCTTCACCCACAATCATGCAG GCTGTAGAGGCAATGGACCGAAATCGAGTCTGTACAGAEST: gi|110711369|gb|EE087767.1|EE087767
genomic: GTCTTGATGGCCTAGAAATGTTTGGTTTTTCTTCACCCACAATCATGCAGgtaaacctac ... cttaaaacagGCTGTAGAGGCAATGGACCGAAATCGAGTCTGTACAGA
EST: GTCTTGATGGCCTANAAATGTTTGGTTTTTCTTCACCCACAATCATGCAG GCTGTANAGGCAATGGACCGAAATCGAGTCTGTACAGAGTACTGGAACTCT
genomic: GTCTTGATGGCCTAGAAATGTTTGGTTTTTCTTCACCCACAATCATGCAGgtaaacctac ... cttaaaacagGCTGTAGAGGCAATGGACCGAAATCGAGTCTGTACAGAGTACTGGAACTCT
gcagacttagattacgtgaaatatattatattttcctttttgtgacttaaaacagGCTGTAGAGGCAATGGACCGAAATCGAGTCTGTACAGAGTACTGGAACTCTCGTCCCTTGATTGCACAACATTCTCAATTAGAAGGTAGTGTTGGAAACC
aaatatattatatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgttggtgactgtcaactattctttttctctttttatgttcaaagcagacttagattacgtgaaatatattatattttcctttttgtgacttaaaacagGCTGTAGAGGCAATGGACCGAAATCGAGTCTGTACAGAGTACTGGAACTCTCGTCCCTTGATTGCACAACATTCTCAATTAGAAGGTAGTGTTGGAAACC
- gttggtg
- - - - - ctgtcaa
- - - - - - - - - - - - - - - - - - - - -caaagca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaatata