Sequence
atgc intronic sequence ATGC exonic sequencegtatccaagaattgcaaatggttttctagaaagtagtgaagcattttatctattccactaataattattctgatctatatcagattcacacttttactcttttaagaattatgaagcaataacaaggtatttaaaaggacttctcattagatgtggtgtttcctctctcagGTTGTGTCTGCAATGGTGAACAATGATCTTATGAGCCTTGTTAACACCAGACCTCTAAAATCCTGGAAAGAAACACTTGCTCTTCTGTGCACT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv13s0158g00140.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: GLYMA09G36050.2 (Glycine max), 3'ss of exon 13
gtatccaagaattgcaaatggttttctagaaagtagtgaagcattttatctattccactaataattattctgatctatatcagattcacacttttactcttttaagaattatgaagcaataacaaggtatttaaaaggacttctcattagatgtggtgtttcctctctcagGTTGTGTCTGCAATGGTGAACAATGATCTTATGAGCCTTGTTAACACCAGACCTCTAAAATCCTGGAAAGAAACACTTGCTCTTCTGTGCACT
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--------------------------------gtagctgatgataacatcatataaactgtcaattttat--atctaacaaaaattctatcctatacctacctgatatttt--------------gtttttttagaaatctctttatttg-tgggtcatttccattttcagATTGTATCAGCAATGGTGAGCAATGATCTCTTGAGCTTAGTGAACACCAGACCACTGAAGTTTTGGAAAGAAACCCTTGCGCTTCTTTGTAGT
upper sequence: Vv13s0158g00140.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: AT3G63460.3 (Arabidopsis thaliana), 3'ss of exon 13
gtatccaagaattgcaaatggttttctagaaagtagtgaagcattttatctattccactaataattattctgatctatatcagattcacacttttactcttttaagaattatgaagcaataacaaggtatttaaaaggacttctcattagatgtggtgtttcctctctcagGTTGTGTCTGCAATGGTGAACAATGATCTTATGAGCCTTGTTAACACCAGACCTCTAAAATCCTGGAAAGAAACACTTGCTCTTCTGTGCACT
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-------------------------------------------gtatatgtat---attctttcccaacttgatatgtaggtaagtgccatctacacccctgt-----ttgtgg-----ttgcaaaatctgtaaa--------ctactgtatgt----ttatctatttcagGTTGTTTCTGCGATGGTGAACAATGATCTCAGGAGCCTTATCTATACAAGGTCACATAAGTTCTGGAAAGAGACTCTTGCTCTCCTCTGTACT
upper sequence: Vv13s0158g00140.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: AT1G18830.1 (Arabidopsis thaliana), 3'ss of exon 13
gtatccaagaattgcaaatggttttctagaaagtagtgaagcattttatctattccactaataattattctgatctatatcagattcacacttttactcttttaagaattatgaagcaataacaaggtatttaaaaggacttctcat-tagatgtggtgtttcctctctcagGTTGTGTCTGCAATGGTGAACAATGATCTTATGAGCCTTGTTAACACCAGACCTCTAAAATCCTGGAAAGAAACACTTGCTCTTCTGTGCACT
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------------------------------------------------------------------gtatagatat-tattaga----cgttttttcaacttta-----cttgatatgttgataag-tat---aagtgtcatcttatattactatgttaat--ctgttacagGTTGTTTCTGCAATGATGAACAATGATCTAATGACCTACCTTCATACAAGACAACCTAAATCCTGGAAAGAAACTCTTGCTCTCATCTGCACTMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|294966834|gb|GW839709.1|GW839709EST: AGAGTACGCGTGATCAGTACCTCAAGATGAGCCGTTCACCCTATCTAAAG GTTGTGTCTGCAATGGTGAACAATGATCTTATGAGCCTTGTTAACACCAGA
genomic: AGAGTACGCGTGATCAGTACCTCAAGATGAGCCGTTCACCCTATCTAAAGgtatccaaga ... cctctctcagGTTGTGTCTGCAATGGTGAACAATGATCTTATGAGCCTTGTTAACACCAGA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.caataacaaggtatttaaaaggacttctcattagatgtggtgtttcctctctcagGTTGTGTCTGCAATGGTGAACAATGATCTTATGAGCCTTGTTAACACCAGACCTCTAAAATCCTGGAAAGAAACACTTGCTCTTCTGTGCACT
caataac putative branch site (score: 2)
tgtttcctctctc putative PPT
tatttaaaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
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gtatccaagaattgcaaatggttttctagaaagtagtgaagcattttatctattccactaataattattctgatctatatcagattcacacttttactcttttaagaattatgaagcaataacaaggtatttaaaaggacttctcattagatgtggtgtttcctctctcagGTTGTGTCTGCAATGGTGAACAATGATCTTATGAGCCTTGTTAACACCAGACCTCTAAAATCCTGGAAAGAAACACTTGCTCTTCTGTGCACT
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