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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagttattgctcttctttgttctatatttgcagagcactttaagtaccaaacttgcctttattcaactgtcaatttataactattacagATGGATATACGAGAACCTGATGATCCAAGCCCATACCTTCTTGCTATATGGACACCAG

Basic information

species Vitis vinifera
transcript Vv13s0074g00450.t01
intron # 13
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0074g00450.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: GLYMA20G32960.1 (Glycine max), 3'ss of exon 21
gttagttattgctcttctttgttctatatttgcagagcactttaagtaccaaacttgcctttattcaactgtcaatttataactattacagATGGATATACGAGAACCTGATGATCCAAGCCCATACCTTCTTGCTATATGGACACCAG
|| ||||||| || ||||||||  |  |          |  | |  |  || | ||    ||||     | ||  | || || |  |||||||||||| ||| ||||||||||| ||||||||||| |||||||| |||||||||||||
gtcagttatt-cttttctttgtaatgaaacattcagtta--tcagcttgcagaatttttcttatgttgttttctttctaaaatt--tacagATGGATAAACGGGAACCTGATGACCCAAGCCCATATCTTCTTGCAATATGGACACCAG

upper sequence: Vv13s0074g00450.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: GLYMA10G34600.1 (Glycine max), 3'ss of exon 19
gttagttattgctcttctttgttctatatttgcagagcactttaagtaccaaacttgcctttattcaactgtcaatttataactattacagATGGATATACGAGAACCTGATGATCCAAGCCCATACCTTCTTGCTATATGGACACCAG
|| ||||||| || || |||||  |  |       ||   |     | |  || || ||||   |    |    |  || || |  |||||||||||| ||| |||||||||||||||||||| || |||||||| |||||||||||||
gtcagttatt-cttttatttgtaatgaaac-attcagttatcagcttgcagaattttccttatgttgttttcttaactaaaatt--tacagATGGATAAACGGGAACCTGATGATCCAAGCCCGTATCTTCTTGCAATATGGACACCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110386925|gb|EC951560.1|EC951560
EST:     GTATGAACTTCCAGATTCACACCCTCTGTTAAAAGGG                         ATGGATATACGAGAACNTGATGATCCAAGCCCATACCTTCTTGCTATATGG
genomic: GTATGAACTTCCAGATTCACACCCTCTGTTAAAAGGGgttagttatt ... actattacagATGGATATACGAGAACCTGATGATCCAAGCCCATACCTTCTTGCTATATGG
EST: gi|110693473|gb|EE069745.1|EE069745
EST:     GTATGAACTTCCAGATTCACACCCTCTGTTAAAAGGG                         ATGGATATACGAGAACCTGATGATCCAAGCCCATACCTTCTTGCTATATGG
genomic: GTATGAACTTCCAGATTCACACCCTCTGTTAAAAGGGgttagttatt ... actattacagATGGATATACGAGAACCTGATGATCCAAGCCCATACCTTCTTGCTATATGG
EST: gi|110419355|gb|EC985574.1|EC985574
EST:     GTATGAACTTCCAGATTCACACCCTCTGTTAAAAGGG                         ATGGATATACGAGAACCTGATGATCCAAGCCCATACCTTCTTGCTATATGG
genomic: GTATGAACTTCCAGATTCACACCCTCTGTTAAAAGGGgttagttatt ... actattacagATGGATATACGAGAACCTGATGATCCAAGCCCATACCTTCTTGCTATATGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcactttaagtaccaaacttgcctttattcaactgtcaatttataactattacagATGGATATACGAGAACCTGATGATCCAAGCCCATACCTTCTTGCTATATGGACACCAG
                                        ttataac  putative branch site (score: 2)
                                   tcaatttataactatt  TA-rich tract