Sequence
atgc intronic sequence ATGC exonic sequence...actaaacttttggatgtttatattccagtatatcatttgacctcctatgttcttgaggaggttattgacatggctcactaattattgatgtttcccatagGTTGGTGTTGGCATGTGCATGGAAGGAATTGAGCAAAACCCAGTTGCTTATGAGCTGATGTCTGAAATGGCATTTCGCAGTGAAAAAGTTCAACTTGTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv13s0064g00370.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: GRMZM2G033592_T01 (Zea mays), 3'ss of exon 13
actaaacttttgg---atgtttatattccagta-tatcatttgacctcctatgttcttgaggaggttattgacatggctcactaattattgatgtttcccatagGTTGGTGTTGGCATGTGCATGGAAGGAATTGAGCAAAACCCAGTTGCTTATGAGCTGATGTCTGAAATGGCATTTCGCAGTGAAAAAGTTCAACTTGTG
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-ttcatctttcatgatatacatgtgtttcagaactgatgtattttcagtgctgtatctaatccgactacttatgcagtgt-ttgactcttgctcttctc--tagATTGGCGTTGGCATGTGCATGGAGGGAATAGAGCACAATCCAGTTGTTTATGAACTTATGTCTGAAATGGCATTTCATAATAAGAAGGTTGAGGTTGAG
upper sequence: Vv13s0064g00370.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: GLYMA10G11720.2 (Glycine max), 3'ss of exon 13
actaaacttttggatgtttatattccagtatatcatttgacctcctatgtt-cttgag-gaggttattgacatggctcactaattattgatgtttcccatagGTTGGTGTTGGCATGTGCATGGAAGGAATTGAGCAAAACCCAGTTGCTTATGAGCTGATGTCTGAAATGGCATTTCGCAGTGAAAAAGTTCAACTTGTG
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cttcagatgttagctggaaaaaagaaaagaaaacatt-gagcgattatgtttcttgattaatgacattttgatttttaaaattttgttaat-tattttgcagGTAGGTGTTGGTATGTGCATGGAAGGAATAGAACAGAACCCTATTGTTTATGAGTTGATGTCTGAAATGGCATTTCGTGATAAGAAAGTTAAAGTTTCG
upper sequence: Vv13s0064g00370.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: AT5G13690.1 (Arabidopsis thaliana), 3'ss of exon 13
---actaaacttttggatgtttatattccagtatatcatttgacctcctatgttcttgag-gaggttattgacatggctca----------ctaattattgatgtttcccatagGTTGGTGTTGGCATGTGCATGGAAGGAATTGAGCAAAACCCAGTTGCTTATGAGCTGATGTCTGAAATGGCATTTCGCAGTGAAAAAGTTCAACTTGTG
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gtaactcataactacgacattcacaatatgtttca-cattttttatcttatgtctataggtgagactattttctccgcttagaaatggaatcttgttatttatgttgcacatagGTCGGTGTAGGAATGTGCATGGAAGGAATAGAGCAGAACCCGGTGGTTTACGAACTAACTTCTGAAATGGCATTTCGAGATGAGAAAGTTGATGTACAG
upper sequence: Vv13s0064g00370.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: PP1S329_23V6.1 (Physcomitrella patens), 3'ss of exon 13
actaaacttttggatgtttatattccagtatatcatttgacctcctatgttcttgaggaggttattgacatggctcactaattattg-atgtt---tcccatagGTTGGTGTTGGCATGTGCATGGAAGGAATTGAGCAAAACCCAGTTGCTTATGAGCTGATGTCTGAAATGGCATTTCGCAGTGAAAAAGTTCAACTTGTG
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gtaggattggtgaaagttttggtt---ggttgtaatacagcaaagaatgttatcggggcgtgtattaat-cgtctctttcttcactgtgtgttgagtctggcagGTAGGTGTTGGCATGTGTATGGAAGGCATTGAGCAGAACCCAGTTGTGTATGACTTGATGGCTGAAATGGCATTTCACAATGCAACCGTCGTTGTCGAG
upper sequence: Vv13s0064g00370.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: EFJ21415 (Selaginella moellendorffii), 3'ss of exon 13
actaaacttttggatgtttatattccagtatatc-atttgacctcctatgttcttgaggaggttattgacatggctcactaattattgatgtttcccatagGTTGGTGTTGGCATGTGCATGGAAGGAATTGAGCAAAACCCAGTTGCTTATGAGCTGATGTCTGAAATGGCATTTCGCAGTGAAAAAGTTCAACTTGTG
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-----------------------------gtatcgatacgtttttctatttcc----gaaagcaattagcaagggg-----------gttgtttc---tagATTGGCGTTGGAATGTGCATGGAAGGCATCGAACAAAACCCAGTCGTCTACGAACTTATGGCTGAAATGGCATTCCGCTCAACTAGAAACGCTCTGAAG
upper sequence: Vv13s0064g00370.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: EFJ23779 (Selaginella moellendorffii), 3'ss of exon 13
actaaacttttggatgtttatattccagtatatc-atttgacctcctatgttcttgaggaggttattgacatggctcactaattattgatgtttcccatagGTTGGTGTTGGCATGTGCATGGAAGGAATTGAGCAAAACCCAGTTGCTTATGAGCTGATGTCTGAAATGGCATTTCGCAGTGAAAAAGTTCAACTTGTG
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-----------------------------gtatcgatacgtttttctatttcc----gaaagcaattagcaagggg-----------gttgtttc---tagATTGGCGTTGGGATGTGCATGGAAGGCATCGAACAAAACCCAGTCGTCTACGAACTTATGGCTGAAATGGCATTCCGCTCAACTAGAAACGCTCTGAAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tatgttcttgaggaggttattgacatggctcactaattattgatgtttcccatagGTTGGTGTTGGCATGTGCATGGAAGGAATTGAGCAAAACCCAGTTGCTTATGAGCTGATGTCTGAAATGGCATTTCGCAGTGAAAAAGTTCAACTTGTG
tgtttccc CT-rich tract
taattattgatgttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
actaaacttttggatgtttatattccagtatatcatttgacctcctatgttcttgaggaggttattgacatggctcactaattattgatgtttcccatagGTTGGTGTTGGCATGTGCATGGAAGGAATTGAGCAAAACCCAGTTGCTTATGAGCTGATGTCTGAAATGGCATTTCGCAGTGAAAAAGTTCAACTTGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
actaaac
- - - - - tggatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acatggc