Sequence
atgc intronic sequence ATGC exonic sequence...gaagtgaattttatgaaagggatgttgccaattcctctttccaatgtgccatttcttccatattaatgcgattctgtattatggactactgaatttgtagGAATGATGGCTTGCTAGCTTTTGTGGAGAACTTTGTGAAGGACCACTTTTTACCAACGATGTTTGTAGATTACCGAAAAGGCGTACAGCAAGCTATATCA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv13s0019g04770.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: GLYMA20G32370.1 (Glycine max), 3'ss of exon 15
gaagtgaattttatgaaagggatgttgccaattcctctttccaatgt-gccatt-tcttccatattaatgcgattctgtatta--tggactactgaatttgtagGAATGATGGCTTGCTAGCTTTTGTGGAGAACTTTGTGAAGGACCACTTTTTACCAACGATGTTTGTAGATTACCGAAAAGGCGTACAGCAAGCTATATCA
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---attgattctg-aacaacaatgatatttctttcaagctcaaattttgttgctatctaactcattaatgttaattggtggtggttgactttgtcaaattgcagCAATGATGGGTTGCTAGCTTTTGTGGAGAACTTTGTGAAGGACCACTTTTTACCAACTATGTTTGTAGACTACCGAAAAGGCGTACAGCAAGCCATATCG
upper sequence: Vv13s0019g04770.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: GLYMA10G35190.2 (Glycine max), 3'ss of exon 11
gaagtgaatttta-tgaaagggatgttgccaattcctctttccaatgtgccatt-tcttccatattaatgcgattctgtatta---tggactactgaatttgtagGAATGATGGCTTGCTAGCTTTTGTGGAGAACTTTGTGAAGGACCACTTTTTACCAACGATGTTTGTAGATTACCGAAAAGGCGTACAGCAAGCTATATCA
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----tggttctgaacaacaatgatatttctt-ttcaagctcaaattttgttgctatctaactcattaatgttaattggtggtggtgttgactttgtcaattgcagCAATGATGGGTTGCTAGCTTTTGTGGAGAACTTTGTGAAGGACCACTTTTTACCAACTATGTTTGTAGACTACCGAAAAGGCGTACAGCAAGCCATATCG
upper sequence: Vv13s0019g04770.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: AT3G10380.1 (Arabidopsis thaliana), 3'ss of exon 15
---------------------------gaag--tga-attttatgaaagggatgttgccaattcctctttccaatgtgccatt----tcttccatattaatgcgattctg-tattat----------ggactactg--aatt--tgtagGAATGATGGCTTGCTAGCTTTTGTGGAGAACTTTGTGAAGGACCACTTTTTACCAACGATGTTTGTAGATTACCGAAAAGGCGTACAGCAAGCTATATCA
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gtaagttcaaaatttccacttttctttgaaggctgtcatcctggcaaagcaaaactacttgctcacaagcccaaaatgaaattattgttttctcaagtgctgagaaattgctagtatattcaccatcgggttattaataattgatgcagGAATGATGGATTGCTTACATTCACTGAAAACTTTGTGAAGGACCATCTGTTACCGACAATGTTTGTGGACTATAGGAAAGGCGTACAGCAAGCTATATCA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gtgccatttcttccatattaatgcgattctgtattatggactactgaatttgtagGAATGATGGCTTGCTAGCTTTTGTGGAGAACTTTGTGAAGGACCACTTTTTACCAACGATGTTTGTAGATTACCGAAAAGGCGTACAGCAAGCTATATCA
tattaat putative branch site (score: 2)
atattaat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gaagtgaattttatgaaagggatgttgccaattcctctttccaatgtgccatttcttccatattaatgcgattctgtattatggactactgaatttgtagGAATGATGGCTTGCTAGCTTTTGTGGAGAACTTTGTGAAGGACCACTTTTTACCAACGATGTTTGTAGATTACCGAAAAGGCGTACAGCAAGCTATATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
gaagtgaa
- - - - - - - -aaaggga
- - - - - - - - - - - - - - caattcc
- - - - - - - - - - - - - - - - - - - - ccaatgt