Sequence
atgc intronic sequence ATGC exonic sequence...aacaaccagatgatgtttatgaaactatcattcggaaagttggttattcttgtaggatcatggattacttgcggcatattactgaaaatctttgtttcagGTACTATGGAGTGTGGCTCATAACTCGCTGTGGTTCGCTTTTGAAAAGTGGCTATAATCTTCACGATTGGGATCTTTGTATATTCATCCTCATCCTCATA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv13s0019g04600.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: GLYMA10G35310.1 (Glycine max), 3'ss of exon 15
aacaaccag-atgatgtttatgaaactatcattcggaaagttggttattcttgtaggatcatggattacttgcggcatattactgaaaatctttgt--ttcagGTACTATGGAGTGTGGCTCATAACTCGCTGTGGTTCGCTTTTGAAAAGTGGCTATAATCTTCACGATTGGGATCTTTGTATATTCATCCTCATCCTCATA
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aatgatcaacattattgtaaagcatacaaaaatttaaaagtgcaagaat---aaggaatgatagatgggcattgaaatgctgttaatttcttttatactgcagGTATCAGGGAGTGTGGCTCATAACTCGTTGTGGTTCACTTTTGAAAACTGGCTATAATCTTCACGATTGGAGTTTGTGCATATCTATCCTCATTCTAATG
upper sequence: Vv13s0019g04600.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: GLYMA20G32210.1 (Glycine max), 3'ss of exon 14
---aacaaccagatgatgtttatga-aactatcattcggaaagttggttattcttgtaggatcatggattacttgcggcatattactgaaaatctttgt--ttcagGTACTATGGAGTGTGGCTCATAACTCGCTGTGGTTCGCTTTTGAAAAGTGGCTATAATCTTCACGATTGGGATCTTTGTATATTCATCCTCATCCTCATA
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aagaaaaacaagaagaaaataatgatagataggtattggttaattg-ttatgcatttgga--catggata--ttg-aacatgctgttcatttcttttatactgcagGTATCAGGGAGTGTGGCTCATAACTCGTTGTGGTTCACTTTTGAAAAGTGGCTACAATCTTCATGATTGGAGTTTGTGCATATCCATACTCATTCTTATG
upper sequence: Vv13s0019g04600.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: GLYMA02G21570.1 (Glycine max), 3'ss of exon 12
--aacaaccagatgatgtttatgaaacta-tcattcggaaagttggttattcttg--taggatcatgg-attacttgcggcatattactgaaaatctttgtttcagGTACTATGGAGTGTGGCTCATAACTCGCTGTGGTTCGCTTTTGAAAAGTGGCTATAATCTTCACGATTGGGATCTTTGTATATTCATCCTCATCCTCATA
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aatataaatataagaaaaatattaaagtacttgatgtacatattaattgttcttaatttgaatctagatactgtttgtgcta-attact-----tctatactgtagGTATCATGGGGTGTGGCTCTTAACTCGTTGTGGTTCACTACTGAAAAGTGGCTATAATCTTAATGATTGGGGTTTGTGTATATCTATCCTTATTCTCATG
upper sequence: Vv13s0019g04600.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: AT1G53390.1 (Arabidopsis thaliana), 3'ss of exon 13
aacaaccagatgatgtttatgaaactatcattcggaaagttggttattcttgtaggatcatggattacttgcggcatattactgaaaatctttgtttcagGTACTATGGAGTGTGGCTCATAACTCGCTGTGGTTCGCTTTTGAAAAGTGGCTATAATCTTCACGATTGGGATCTTTGTATATTCATCCTCATCCTCATA
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------------gtaaggataaaa--agcaaaaagaaa-taaattatatttcttccctcaaaagctgggtttgattcatttattgg-------gtttcagGTACTATGGAGTATGGATGATTACTCGATGTGGATCGCTTATGAAGAGTGGCTACGACATTAATAAATGGAGTCTGTGTATAATGATATTGCTTCTCGTAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|33406999|gb|CF212626.1|CF212626EST: TGTTACCCAAAATGGGCTTTAGAAGCATTTGTGATTGCAAATGCTGAGAG GTACTATGGAGTGTGGCTCATAACTCGCTGTGGTTCGCTTTTGAAAAGTGG
genomic: TGTTACCCAAAATGGGCTTTAGAAGCATTTGTGATTGCAAATGCTGAGAGgtagatacaa ... tttgtttcagGTACTATGGAGTGTGGCTCATAACTCGCTGTGGTTCGCTTTTGAAAAGTGG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.attcttgtaggatcatggattacttgcggcatattactgaaaatctttgtttcagGTACTATGGAGTGTGGCTCATAACTCGCTGTGGTTCGCTTTTGAAAAGTGGCTATAATCTTCACGATTGGGATCTTTGTATATTCATCCTCATCCTCATA
tctttgtttc CT-rich tract
atattactgaaaat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
aacaaccagatgatgtttatgaaactatcattcggaaagttggttattcttgtaggatcatggattacttgcggcatattactgaaaatctttgtttcagGTACTATGGAGTGTGGCTCATAACTCGCTGTGGTTCGCTTTTGAAAAGTGGCTATAATCTTCACGATTGGGATCTTTGTATATTCATCCTCATCCTCATA
-acaacca
- - - - - - - - - - gaaacta
- - - - - - - - - - - - - - - - - - - - - - - - - - - -gatcatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tacttgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaaatc