1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...ctgtgcctaatggatggccttataccttgtaatattttttgttacctttattatttactgaatctctgaagttatacaactggtctttccttgatcctagGCACGGGTAATGGGCCATCAATTTGATCAGTTTTCAGCTTATTCTGGACAAGTAGCACCATCCCTGGGTGGATGGGAGGAGCAAAAAAGCCAGCGGGATT
species | Vitis vinifera |
transcript | Vv13s0019g00880.t01 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: TTGAAGAGATGAGTGGCATTGTTAATTTCAAAATGCATCAGGTGTATCAG GCACGGGTAATGGGCCATCAATTTGATCAGTTTTCAGCTTATTCTGGACAAEST: gi|110699544|gb|EE076634.1|EE076634
genomic: TTGAAGAGATGAGTGGCATTGTTAATTTCAAAATGCATCAGGTGTATCAGgtatgccttt ... ttgatcctagGCACGGGTAATGGGCCATCAATTTGATCAGTTTTCAGCTTATTCTGGACAA
EST: TTGAAGAGATGAGTGGCATTGTTAATTTCAAAATGCATCAGGTGTATCAG GCACGGGTAATGGGCCATCAATTTGATCAGTTTTCAGCTTATTCTGGACAA
genomic: TTGAAGAGATGAGTGGCATTGTTAATTTCAAAATGCATCAGGTGTATCAGgtatgccttt ... ttgatcctagGCACGGGTAATGGGCCATCAATTTGATCAGTTTTCAGCTTATTCTGGACAA
ctttattatttactgaatctctgaagttatacaactggtctttccttgatcctagGCACGGGTAATGGGCCATCAATTTGATCAGTTTTCAGCTTATTCTGGACAAGTAGCACCATCCCTGGGTGGATGGGAGGAGCAAAAAAGCCAGCGGGATT
ccttgat putative branch site (score: 5)
tctttccttgatcct CT-rich tract
ttatttact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctgtgcctaatggatggccttataccttgtaatattttttgttacctttattatttactgaatctctgaagttatacaactggtctttccttgatcctagGCACGGGTAATGGGCCATCAATTTGATCAGTTTTCAGCTTATTCTGGACAAGTAGCACCATCCCTGGGTGGATGGGAGGAGCAAAAAAGCCAGCGGGATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- -tgcctaa
- - - - - tggatgg
- - - - - - - - - - - taccttg
- - - - - - - - - - - - - - - - - - - -tgttacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctctgaa