Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcattttcagTCATTTTCAGTATCTCGGTTGTCTCTCCTGTTGAAATCGATTGGAATTTCTCTGATGAGGGCCAGGTGCTTCTCTCTAGCCACAAACTAGGTTTATGTGA

Basic information

species Vitis vinifera
transcript Vv12s0178g00020.t01
intron # 13
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30137944|gb|CB923282.1|CB923282
EST:     CAAGAAGAAGATGGAACTTGGGAAATTCAGCTGATTATTTGCCAATTGTG                         G
genomic: CAAGAAGAAGATGGAACTTGGGAAATTCAGCTGATTATTTGCCAATTGTGgtcattttca ... tcattttcag-
EST: gi|30137944|gb|CB923282.1|CB923282
EST:     CAAGAAGAAGATGGAACTTGGGAAATTCAGCTGATTATTTGCCAATTGTG                         G
genomic: CAAGAAGAAGATGGAACTTGGGAAATTCAGCTGATTATTTGCCAATTGTGgtcattttca ... tcattttcag-
EST: gi|71890676|gb|DT039731.1|DT039731
EST:     CAAGAAGAAGATGGAACTTGGGAAATTCAGCTGATTATTTGCCAATTGTG                         G
genomic: CAAGAAGAAGATGGAACTTGGGAAATTCAGCTGATTATTTGCCAATTGTGgtcattttca ... tcattttcag-
EST: gi|71890676|gb|DT039731.1|DT039731
EST:     CAAGAAGAAGATGGAACTTGGGAAATTCAGCTGATTATTTGCCAATTGTG                         G
genomic: CAAGAAGAAGATGGAACTTGGGAAATTCAGCTGATTATTTGCCAATTGTGgtcattttca ... tcattttcag-
EST: gi|110357757|gb|EC921480.1|EC921480
EST:     CAAGAAGAAGATGGAACTTGGGAAATTCAGCTGATTATTTGCCAATTGTG                         G
genomic: CAAGAAGAAGATGGAACTTGGGAAATTCAGCTGATTATTTGCCAATTGTGgtcattttca ... tcattttcag-
EST: gi|110357757|gb|EC921480.1|EC921480
EST:     CAAGAAGAAGATGGAACTTGGGAAATTCAGCTGATTATTTGCCAATTGTG                         G
genomic: CAAGAAGAAGATGGAACTTGGGAAATTCAGCTGATTATTTGCCAATTGTGgtcattttca ... tcattttcag-
EST: gi|30130137|gb|CB915476.1|CB915476
EST:     AGAAGATGGAACTTGGGAAATTCAGCTGATTATTTGCCAATTGTGG                         TCATTTTCAGTATCTCGGTTGTCTCTCCTGTTGAAATCGATTGGAATTTC
genomic: AGAAGATGGAACTTGGGAAATTCAGCTGATTATTTGCCAATTGT-Ggtcattttca ... tcattttcagTCATTTTCAGTATCTCGGTTGTCTCTCCTGTTGAAATCGATTGGAATTTC
EST: gi|32271127|gb|CD720286.1|CD720286
EST:     CAAGAAGAAGATGGAACTTGGGAAATTCAGCTGATTATTTGCCAATTGTG                         G
genomic: CAAGAAGAAGATGGAACTTGGGAAATTCAGCTGATTATTTGCCAATTGTGgtcattttca ... tcattttcag-
EST: gi|32271127|gb|CD720286.1|CD720286
EST:     CAAGAAGAAGATGGAACTTGGGAAATTCAGCTGATTATTTGCCAATTGTG                         G
genomic: CAAGAAGAAGATGGAACTTGGGAAATTCAGCTGATTATTTGCCAATTGTGgtcattttca ... tcattttcag-
EST: gi|30296234|gb|CB973028.1|CB973028
EST:     CAAGAAGAAGATGGAACTTGGGAAATTCAGCTGATTATTTGCCAATTGTG                         G
genomic: CAAGAAGAAGATGGAACTTGGGAAATTCAGCTGATTATTTGCCAATTGTGgtcattttca ... tcattttcag-
EST: gi|30296234|gb|CB973028.1|CB973028
EST:     CAAGAAGAAGATGGAACTTGGGAAATTCAGCTGATTATTTGCCAATTGTG                         G
genomic: CAAGAAGAAGATGGAACTTGGGAAATTCAGCTGATTATTTGCCAATTGTGgtcattttca ... tcattttcag-
EST: gi|110363519|gb|EC927113.1|EC927113
EST:     CAAGAAGAAGATGGAACTTGGGAAATTCAGCTGATTATTTGCCAATTGTG                         G
genomic: CAAGAAGAAGATGGAACTTGGGAAATTCAGCTGATTATTTGCCAATTGTGgtcattttca ... tcattttcag-
EST: gi|110363519|gb|EC927113.1|EC927113
EST:     CAAGAAGAAGATGGAACTTGGGAAATTCAGCTGATTATTTGCCAATTGTG                         G
genomic: CAAGAAGAAGATGGAACTTGGGAAATTCAGCTGATTATTTGCCAATTGTGgtcattttca ... tcattttcag-
EST: gi|110395365|gb|EC961027.1|EC961027
EST:     CAAGAAGAAGATGGAACTTGGGAAATTCAGCTGATTATTTGCCAATTGTGG                         TCATTTTCAGTATCTCGGTTGTCTCTCCTGTTGAAATCGATTGGAATTTA
genomic: CAAGAAGAAGATGGAACTTGGGAAATTCAGCTGATTATTTGCCAATTGT-Ggtcattttca ... tcattttcagTCATTTTCAGTATCTCGGTTGTCTCTCCTGTTGAAATCGATTGGAATTTC
EST: gi|34362104|gb|CF403689.1|CF403689
EST:     CAAGAAGAAGATGGAACTTGGGAAATTCAGCTGATTATTTGCCAATTGTG                         G
genomic: CAAGAAGAAGATGGAACTTGGGAAATTCAGCTGATTATTTGCCAATTGTGgtcattttca ... tcattttcag-
EST: gi|34362104|gb|CF403689.1|CF403689
EST:     CAAGAAGAAGATGGAACTTGGGAAATTCAGCTGATTATTTGCCAATTGTG                         G
genomic: CAAGAAGAAGATGGAACTTGGGAAATTCAGCTGATTATTTGCCAATTGTGgtcattttca ... tcattttcag-
EST: gi|32461194|gb|CD802368.1|CD802368
EST:     CAAGAAGAAGATGGAACTTGGGAAATTCAGCTGATTATTTGCCAATTGTGG                         TCATTTTCAGTATCTCGGTTGTCTCTCCTGTTGAAATCGATTGGAATTTA
genomic: CAAGAAGAAGATGGAACTTGGGAAATTCAGCTGATTATTTGCCAATTGT-Ggtcattttca ... tcattttcagTCATTTTCAGTATCTCGGTTGTCTCTCCTGTTGAAATCGATTGGAATTTC
EST: gi|30328230|gb|CD011492.1|CD011492
EST:     CAAGAAGAAGATGGAACTTGGGAAATTCAGCTGATTATTTGCCAATTGTG                         G
genomic: CAAGAAGAAGATGGAACTTGGGAAATTCAGCTGATTATTTGCCAATTGTGgtcattttca ... tcattttcag-
EST: gi|30328230|gb|CD011492.1|CD011492
EST:     CAAGAAGAAGATGGAACTTGGGAAATTCAGCTGATTATTTGCCAATTGTG                         G
genomic: CAAGAAGAAGATGGAACTTGGGAAATTCAGCTGATTATTTGCCAATTGTGgtcattttca ... tcattttcag-
EST: gi|71881928|gb|DT030983.1|DT030983
EST:     TCAGCTGATTATTTGCCAATTGTGG                         TCATTTTCAGTATCTCGGTTGTCTCTCCTGTTGAAATCGATTGGAATTTA
genomic: TCAGCTGATTATTTGCCAATTGT-Ggtcattttca ... tcattttcagTCATTTTCAGTATCTCGGTTGTCTCTCCTGTTGAAATCGATTGGAATTTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtcattttcagTCATTTTCAGTATCTCGGTTGTCTCTCCTGTTGAAATCGATTGGAATTTCTCTGATGAGGGCCAGGTGCTTCTCTCTAGCCACAAACTAGGTTTATGTGA
                                                                                        tcattttc  CT-rich tract
                                             tcatttt  TA-rich tract