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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacttctcactctcccctccctctctcccttcctccctctcccttccttcctctcccctctcttcaccaactccccattcaaggctcccattcaaggctcaaacatgcactatagttgaatctgtcataaacttctttatttttatcacatattacctcttgcagGTGCCATGGTCCGGAGTGACTACAAATCATTCCACCTCGCCATTTGCTGAGGAAATGTACGAGAAAATCAAAGACACCCTTGTTGAGTATGAGGTGGTGA

Basic information

species Vitis vinifera
transcript Vv12s0057g01510.t01
intron # 13
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv12s0057g01510.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: GLYMA14G00660.1 (Glycine max), 3'ss of exon 13
gtacttctcactctcccctccctctctcccttcctccctctcccttccttcctctcccctctcttcaccaact-ccccattcaaggctcccattcaaggctcaaacatgcactatagttgaatctgtcataaacttctttatttttatcacatattacctcttgcagGTGCCATGGTCCGGAGTGACTACAAATCATTCCACCTCGCCATTTGCTGAGGAAATGTACGAGAAAATCAAAGACACCCTTGTTGAGTATGAGGTGGTGA
                                                                  |  |  |     ||| |||    |   |  |    |||  | |||||  |||          |||||   ||| |  |   | | |         |  |||||||||||| | ||||| || ||||| || |||||||| ||||||||||||||||||||||||||||||||||||| ||||    ||||||| || || |
----------------------------------------------------------------gtagtagttattttatttaag----ctgctttatatacaacaaagcacttcagtc--------tataaatgacttgacctccctaataa--------tgacagGTGCCATGGGCTGGAGTAACCACAAACCACTCCACCTCCCCATTTGCTGAGGAAATGTACGAGAAAATCAAAGACAACCTTACCCAGTATGAAGTTGTAA

upper sequence: Vv12s0057g01510.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: GLYMA02G47930.1 (Glycine max), 3'ss of exon 12
gtacttctcactctcccctccctctctcccttcctccctctcccttccttcctctcccctctcttcaccaactccccattcaaggctcccattcaaggctcaaacatgcactatagttgaatctgtcataaacttctttatttttatcacatattacctcttgcagGTGCCATGGTCCGGAGTGACTACAAATCATTCCACCTCGCCATTTGCTGAGGAAATGTACGAGAAAATCAAAGACACCCTTGTTGAGTATGAGGTGGTGA
                                                                  |  |  |      |  | ||| | ||   |     ||  | |||||  |||          |||||   ||| |  |     | | || |     | |||||||||||| | ||||| || ||||| || |||||||| |||||||| ||||||||||| |||||||||||||||| ||||      || || || || |
----------------------------------------------------------------gtagtagttattttatttaagctgctat---aaatgtaataaagcacttcagtc--------tataaatgacttgacctccccaata-atga-----tacagGTGCCATGGGCTGGAGTAACCACAAACCACTCCACCTCCCCATTTGCCGAGGAAATGTATGAGAAAATCAAAGACAACCTTACCCTTTACGAAGTTGTAA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatagttgaatctgtcataaacttctttatttttatcacatattacctcttgcagGTGCCATGGTCCGGAGTGACTACAAATCATTCCACCTCGCCATTTGCTGAGGAAATGTACGAGAAAATCAAAGACACCCTTGTTGAGTATGAGGTGGTGA
                                          ttacctctt  CT-rich tract
                ataaacttctttattt  TA-rich tract