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...gtatttgtgctataaccctgttattttattttattttattgatagaggagaacctcttcttatattttactctcatactcatactacaatggtgttgcagGTACTGAGGCAGAAAGATGGGAAATATGGAGTCGGTGGTGTTTGCAATGGTGGAGGTGGTGCATCAGCACTAGTTGTAGAGCTTGTGTAAGCCTTGTTAT
species | Vitis vinifera |
transcript | Vv12s0057g01200.t01 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: GACATCCTCTAGGTTGCAGTGGAGCCCGAATCTTGGTCACACTTTTGGGG GCACTGAGGCAGAAAGATGGGAAATATGGAGTCAGTGGTGTTTGCAATGGTEST: gi|30130059|gb|CB915398.1|CB915398
genomic: GACATCCTCTAGGTTGCAGTGGAGCCCGAATCTTGGTCACACTTTTGGGGgtatatttgt ... ggtgttgcagGTACTGAGGCAGAAAGATGGGAAATATGGAGTCGGTGGTGTTTGCAATGGT
EST: GACATCCTCTAGGTTGCAGTGGAGCCCGAATCTTGGTCACACTTTTGGGG GTACTGAGGCAGAAAGATGGGAAATATGGAGTCGGTGGTGTTTGCAATGGTEST: gi|71876405|gb|DT025460.1|DT025460
genomic: GACATCCTCTAGGTTGCAGTGGAGCCCGAATCTTGGTCACACTTTTGGGGgtatatttgt ... ggtgttgcagGTACTGAGGCAGAAAGATGGGAAATATGGAGTCGGTGGTGTTTGCAATGGT
EST: GACATCCTCTAGGTTGCAGTGGAGCCCGAATCTTGGTCACACTTTTGGGG GTACTGAGGCAGAAAGATGGGAAATATGGAGTCGGTGGTGTTTGCAATGGTEST: gi|110700654|gb|EE077500.1|EE077500
genomic: GACATCCTCTAGGTTGCAGTGGAGCCCGAATCTTGGTCACACTTTTGGGGgtatatttgt ... ggtgttgcagGTACTGAGGCAGAAAGATGGGAAATATGGAGTCGGTGGTGTTTGCAATGGT
EST: GACATCCTCTAGGTTGCAGTGGAGCCCGAATCTTGGTCACACTTTTGGGG GTACTGAGGCACAAAGATGGCAAATATGCAGTCCGTGGTGTTTGCAATGTTEST: gi|349833317|gb|FQ416695.1|FQ416695
genomic: GACATCCTCTAGGTTGCAGTGGAGCCCGAATCTTGGTCACACTTTTGGGGgtatatttgt ... ggtgttgcagGTACTGAGGCAGAAAGATGGGAAATATGGAGTCGGTGGTGTTTGCAATGGT
EST: GACATCCTCTAGGTTGCAGTGGAGCCCGAATCTTGGTCACACTTTTGGGG GTACTGAAGCAGAAAAATGGGEST: gi|110368276|gb|EC932247.1|EC932247
genomic: GACATCCTCTAGGTTGCAGTGGAGCCCGAATCTTGGTCACACTTTTGGGGgtatatttgt ... ggtgttgcagGTACTGAGGCAGAAAGATGGG
EST: GACATCCTCTAGGTTGCAGTGGAGCCCGAATCTTGGTCACACTTTTGGGG GTACTGAGGCAGAAAGATGGGAAATATGGAGTCAGTGGTGTTTGCAATGGTEST: gi|33402805|gb|CF208432.1|CF208432
genomic: GACATCCTCTAGGTTGCAGTGGAGCCCGAATCTTGGTCACACTTTTGGGGgtatatttgt ... ggtgttgcagGTACTGAGGCAGAAAGATGGGAAATATGGAGTCGGTGGTGTTTGCAATGGT
EST: GACATCCTCTAGGTTGCAGTGGAGCCCGAATCTTGGTCACACTTTTGGGG GTACTGAGGCAGAAAGATGGGAAATATG-ATGTCAGTGGTGTTTGCAATAGEST: gi|110361968|gb|EC925474.1|EC925474
genomic: GACATCCTCTAGGTTGCAGTGGAGCCCGAATCTTGGTCACACTTTTGGGGgtatatttgt ... ggtgttgcagGTACTGAGGCAGAAAGATGGGAAATATGGA-GTCGGTGGTGTTTGCAATGG
EST: GACATCCTCTAGGTTGCAGTGGAGCCCGAATCTTGGTCACACTTTTGGGG GTACTGAGGCAGAAAGATGGGAAATATGGAGTCAGTGGTGTTTGCAATGGTEST: gi|30133750|gb|CB919089.1|CB919089
genomic: GACATCCTCTAGGTTGCAGTGGAGCCCGAATCTTGGTCACACTTTTGGGGgtatatttgt ... ggtgttgcagGTACTGAGGCAGAAAGATGGGAAATATGGAGTCGGTGGTGTTTGCAATGGT
EST: GACATCCTCTAGGTTGCAGTGGAGCCCGAATCTTGGTCACACTTTTGGGG GTACTGAGGCAGAAAGATGGGAAATATGGAGTCGGTGGTGTTTGCAATGGTEST: gi|26259676|gb|CA810739.1|CA810739
genomic: GACATCCTCTAGGTTGCAGTGGAGCCCGAATCTTGGTCACACTTTTGGGGgtatatttgt ... ggtgttgcagGTACTGAGGCAGAAAGATGGGAAATATGGAGTCGGTGGTGTTTGCAATGGT
EST: GACATCCTCTAGGTTGCAGTGGAGCCCGAATCTTGGTCACACTTTTGGGG GTACTGAGGCAGAAAGATGGGAAATATGGAGTCGGTGGTGTTTGCAATGGTEST: gi|110361336|gb|EC924802.1|EC924802
genomic: GACATCCTCTAGGTTGCAGTGGAGCCCGAATCTTGGTCACACTTTTGGGGgtatatttgt ... ggtgttgcagGTACTGAGGCAGAAAGATGGGAAATATGGAGTCGGTGGTGTTTGCAATGGT
EST: GACATCCTCTAGGTTGCAGTGGAGCCCGAATCTTGGTCACACTTTTGGGG GTACTGAGGCAGAAAGATGGGAAATATGGAGTCAGTGGTGTTTGCAATGGTEST: gi|110362059|gb|EC925566.1|EC925566
genomic: GACATCCTCTAGGTTGCAGTGGAGCCCGAATCTTGGTCACACTTTTGGGGgtatatttgt ... ggtgttgcagGTACTGAGGCAGAAAGATGGGAAATATGGAGTCGGTGGTGTTTGCAATGGT
EST: GACATCCTCTAGGTTGCAGTGGAGCCCGAATCTTGGTCACACTTTTGGGG GTACTGAGGCAGAAAGATGGGAAATATGGAGTCGGTGGTGTTTGCAATGGTEST: gi|110357331|gb|EC920800.1|EC920800
genomic: GACATCCTCTAGGTTGCAGTGGAGCCCGAATCTTGGTCACACTTTTGGGGgtatatttgt ... ggtgttgcagGTACTGAGGCAGAAAGATGGGAAATATGGAGTCGGTGGTGTTTGCAATGGT
EST: GACATCCTCTAGGTTGCAGTGGAGCCCGAATCTTGGTCACACTTTTGGGG GTACTGAGGCAGAAAGATGGGAAATATGGAGTCGGTGGTGTTTGCAATGGTEST: gi|32246227|gb|CD712046.1|CD712046
genomic: GACATCCTCTAGGTTGCAGTGGAGCCCGAATCTTGGTCACACTTTTGGGGgtatatttgt ... ggtgttgcagGTACTGAGGCAGAAAGATGGGAAATATGGAGTCGGTGGTGTTTGCAATGGT
EST: GACATCCTTTAGGTTGCAGTGGAGCCCGAATCTTGGTCACACTTTTGGGG GTACTGAGGCAGAAAGATGGGAAATATGGAGTCGGTGGTGTTTGCAATGGTEST: gi|33403297|gb|CF208924.1|CF208924
genomic: GACATCCTCTAGGTTGCAGTGGAGCCCGAATCTTGGTCACACTTTTGGGGgtatatttgt ... ggtgttgcagGTACTGAGGCAGAAAGATGGGAAATATGGAGTCGGTGGTGTTTGCAATGGT
EST: GACATCCTCTAGGTTGCAGTGGAGCCCGAATCTTGGTCACACTTTTGGGG GTACTGAGGCAGAAAGATGGGAAATATGGAGTCAGTGGTGTTTGCAATGGTEST: gi|110723122|gb|EE100072.1|EE100072
genomic: GACATCCTCTAGGTTGCAGTGGAGCCCGAATCTTGGTCACACTTTTGGGGgtatatttgt ... ggtgttgcagGTACTGAGGCAGAAAGATGGGAAATATGGAGTCGGTGGTGTTTGCAATGGT
EST: GACATCCTCTAGGTTGCAGTGGAGCCCGAATCTTGGTCACACTTTTGGGG GTACTGANGCAGAAAGATGGGAAATATGGAGTCNGTGGTGTTTGGCA-TGG
genomic: GACATCCTCTAGGTTGCAGTGGAGCCCGAATCTTGGTCACACTTTTGGGGgtatatttgt ... ggtgttgcagGTACTGAGGCAGAAAGATGGGAAATATGGAGTCGGTGGTGTTTG-CAATGG
aggagaacctcttcttatattttactctcatactcatactacaatggtgttgcagGTACTGAGGCAGAAAGATGGGAAATATGGAGTCGGTGGTGTTTGCAATGGTGGAGGTGGTGCATCAGCACTAGTTGTAGAGCTTGTGTAAGCCTTGTTAT
tcttcttatatttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatttgtgctataaccctgttattttattttattttattgatagaggagaacctcttcttatattttactctcatactcatactacaatggtgttgcagGTACTGAGGCAGAAAGATGGGAAATATGGAGTCGGTGGTGTTTGCAATGGTGGAGGTGGTGCATCAGCACTAGTTGTAGAGCTTGTGTAAGCCTTGTTAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- -tttgtgc
- - - - - - - accctgt
- - - - - - - - - - - - - - - - - - - - - - -aggagaa