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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatttagtacaacttgtctttattgctttgtaggataaagacttttcatattatatggttcaattattgaatttcaaattgttgcagGATTACCATCGCTTTCATTTTCCAGTTTCTGGAACCATTGAGTGTTTTGTTGACATACCCGGATGCTTATATACA

Basic information

species Vitis vinifera
transcript Vv12s0055g00710.t01
intron # 13
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv12s0055g00710.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: PP1S189_73V6.1 (Physcomitrella patens), 3'ss of exon 16
----gtatttagtacaacttgtctttattgctttgtaggata---aagacttttcatattatatggtt--------caattattga---atttcaaat----tgttgcagGATTACCATCGCTTTCATTTTCCAGTTTCTGGAACCATTGAGTGTTTTGTTGACATACCCGGATGCTTATATACA
      || |    |  | |  | ||    | ||| |  | |   ||| |||||   |    ||||||        || || ||||   |  | ||||    |  |||||||||||||||| ||||||| ||||||| |||| |  |||  | |  | | |||  ||||||||    | || || 
gtccacatctgacccttcgtaacattgggacattgaaatacaggcaagtctttttgaagccaatggtttttgaagccagtttttgatataactgaaatattttcctgcagGATTACCATCGTTTTCATTCTCCAGTTACTGGTAGGATTTTGAGAGTGGATGATGTACCCGGAATGCTGTACACG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32247401|gb|CD713220.1|CD713220
EST:     CTAGTTCTTTTATTAATGGATCCTTGGTGATATTCCGTTTAGCACCACAG                         GATTACCATCGCTTTCATTTTCCAGTTTCTGGAACCATTGAGCATTTTGTT
genomic: CTAGTTCTTTTATTAATGGATCCTTGGTGATATTCCGTTTAGCACCACAGgtatttagta ... attgttgcagGATTACCATCGCTTTCATTTTCCAGTTTCTGGAACCATTGAGTGTTTTGTT
EST: gi|32269098|gb|CD718257.1|CD718257
EST:     CTAGTTCTTTTATTAATGGATCCTTGGTGATATTCCGTTTAGCACCACAG                         GATTACCATCGCTTTCATTTTCCAGTTTCTGGAACCATTGAGCATTTTGTT
genomic: CTAGTTCTTTTATTAATGGATCCTTGGTGATATTCCGTTTAGCACCACAGgtatttagta ... attgttgcagGATTACCATCGCTTTCATTTTCCAGTTTCTGGAACCATTGAGTGTTTTGTT
EST: gi|32249664|gb|CD715483.1|CD715483
EST:     CTAGTTCTTTTATTAATGGATCCTTGGTGATATTCCGTTTAGCACCACAG                         GATTACCATCGCTTTCATTTTCCAGTTTCTGGAACCATTGAGCATTTTGTT
genomic: CTAGTTCTTTTATTAATGGATCCTTGGTGATATTCCGTTTAGCACCACAGgtatttagta ... attgttgcagGATTACCATCGCTTTCATTTTCCAGTTTCTGGAACCATTGAGTGTTTTGTT
EST: gi|30328312|gb|CD011574.1|CD011574
EST:     CTAGTTCTTTTATTAATGGATCCTTGGTGATATTCCGTTTAGCACCACAG                         GATTACCATCGCTTTCATTTTCCAGTTTCTGGAACCATTGAGTGTTTTGTT
genomic: CTAGTTCTTTTATTAATGGATCCTTGGTGATATTCCGTTTAGCACCACAGgtatttagta ... attgttgcagGATTACCATCGCTTTCATTTTCCAGTTTCTGGAACCATTGAGTGTTTTGTT
EST: gi|30327654|gb|CD010916.1|CD010916
EST:     CTAGTTCTTTTATTAATGGATCCTTGGTGATATTCCGTTTAGCACCACAG                         GATTACCATCGCTTTCATTTTCCAGTTTCTGGAACCATTGAGCATTTTGTT
genomic: CTAGTTCTTTTATTAATGGATCCTTGGTGATATTCCGTTTAGCACCACAGgtatttagta ... attgttgcagGATTACCATCGCTTTCATTTTCCAGTTTCTGGAACCATTGAGTGTTTTGTT
EST: gi|110703791|gb|EE080956.1|EE080956
EST:     CTAGTTCTTTTATTAATGGATCCTTGGTGATATTCCGTTTAGCACCACAA                         GATTACCATCGCTTTCATTTTCCAGTTTCTGGAACCATTGAGCGTTTTGTT
genomic: CTAGTTCTTTTATTAATGGATCCTTGGTGATATTCCGTTTAGCACCACAGgtatttagta ... attgttgcagGATTACCATCGCTTTCATTTTCCAGTTTCTGGAACCATTGAGTGTTTTGTT
EST: gi|32249812|gb|CD715631.1|CD715631
EST:     CTAGTTCTTTTATTAATGGATCCTTGGTGATATTCCGTTTAGCACCACAG                         GATTACCATCGCTTTCATTTTCCAGTTTCTGGAACCATTGAGCATTTTGTT
genomic: CTAGTTCTTTTATTAATGGATCCTTGGTGATATTCCGTTTAGCACCACAGgtatttagta ... attgttgcagGATTACCATCGCTTTCATTTTCCAGTTTCTGGAACCATTGAGTGTTTTGTT
EST: gi|32270392|gb|CD719551.1|CD719551
EST:     CTAGTTCTTTTATTAATGGATCCTTGGTGATATTCCGTTTAGCACCACAG                         GATTACCATCGCTTTCATTTTCCAGTTTCTGGAACCATTGAGCATTTTGTT
genomic: CTAGTTCTTTTATTAATGGATCCTTGGTGATATTCCGTTTAGCACCACAGgtatttagta ... attgttgcagGATTACCATCGCTTTCATTTTCCAGTTTCTGGAACCATTGAGTGTTTTGTT
EST: gi|30325758|gb|CD009020.1|CD009020
EST:     CTAGTTCTTTTATTAATGGATCCTTGGTGATATTCCGTTTAGCACCACAG                         GATTACCATCGCTTTCATTTTCCAGTTTCTGGAACCATTGAGCATTTTGTT
genomic: CTAGTTCTTTTATTAATGGATCCTTGGTGATATTCCGTTTAGCACCACAGgtatttagta ... attgttgcagGATTACCATCGCTTTCATTTTCCAGTTTCTGGAACCATTGAGTGTTTTGTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggataaagacttttcatattatatggttcaattattgaatttcaaattgttgcagGATTACCATCGCTTTCATTTTCCAGTTTCTGGAACCATTGAGTGTTTTGTTGACATACCCGGATGCTTATATACA
               atattatatggttcaa  TA-rich tract