Sequence
atgc intronic sequence ATGC exonic sequence...ctatgctagatgaattcattgaaacataacatgtgaatgctgtaaattcatgactccactaatgaaaacaagcatcttgacttctcatgggtacatgcagGGTTCTTGTTCAGTTCTGGTGTAGCTATTGCACTGTGCCTCTGAACGTAATTATCACACAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv12s0035g00260.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: GLYMA08G20120.1 (Glycine max), 3'ss of exon 13
---------------ctatgctagatgaattcattgaaacataacatgtgaatgctgtaaattc----atgactccactaatgaaaacaagcat---cttgacttctcatgggtacatgcagGGTTCTTGTTCAGTTCTGGTGTAGCTATTGCACTGTGCCTCTGAACGTAATTATCACACAG
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gttggtttcatctctcttttcaagaatgctttgttttattttcttgact-aattttccggattctccaatacttcaatctgcagggactctcattttcttttctttttttaacaacttgcagTGCTCTTGTTCAGTTCTGGTGTAGCTATATGACAGTGCCCCTGAACGTAATAGTTTCACAG
upper sequence: Vv12s0035g00260.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: GLYMA12G29080.1 (Glycine max), 3'ss of exon 13
---------------------ctatgctagatgaattcattgaaaca-taacatg-tgaatgctgtaaattcatgactccactaatgaaaacaagcatcttgacttctcatgggtacatgcagGGTTCTTGTTCAGTTCTGGTGTAGCTATTGCACTGTGCCTCTGAACGTAATTATCACACAG
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gttggcatgggttggtttcacctctctttcaagaatgctttgttttagtttcttgactaattttccagattctccaacacttcaatctacagggac-tctttttttttttttttaacttgcagTGCTCTTGTTCAGTTCTGGTGTAGCTATATGACAGTGCCCCTGAATGTAATAGTTTCACAG
upper sequence: Vv12s0035g00260.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: AT1G11000.1 (Arabidopsis thaliana), 3'ss of exon 13
ctatgctagatgaattcattgaaacataacatgtgaatgc-tgtaaattcatgactccactaatgaaaacaagcatcttgacttctcatgggtacatgcagGGTTCTTGTTCAGTTCTGGTGTAGCTATTGCACTGTGCCTCTGAACGTAATTATCACACAG
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-------------------------gtgcgtttcaaatacacaacaattcgcagcaacacactgtctcttaagattttttttttctttctggtgaatgcagGGTTCTCGTTCAGTTCTGGTGTAGTTATGGCACTGTGCCTCTCAATGTAATCGTTACTCAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.attcatgactccactaatgaaaacaagcatcttgacttctcatgggtacatgcagGGTTCTTGTTCAGTTCTGGTGTAGCTATTGCACTGTGCCTCTGAACGTAATTATCACACAG
taatgaaaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ctatgctagatgaattcattgaaacataacatgtgaatgctgtaaattcatgactccactaatgaaaacaagcatcttgacttctcatgggtacatgcagGGTTCTTGTTCAGTTCTGGTGTAGCTATTGCACTGTGCCTCTGAACGTAATTATCACACAG
ctatgct
- - - - - - - - - - gaaacat
- - - - - - - - - - - - - - -catgtga
- - - - - - - - - - - - - - - - - - -tgctgta
- - - - - - - - - - - - - - - - - - - - - - - -tcatgac
- - - - - - - - - - - - - - - - - - - - - - - - - - - -ccactaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaacaa