Sequence
atgc intronic sequence ATGC exonic sequence...ttatcatagaacttttatcactgtttgtccttgtttttttagtttttttcccttttatcatcataattttttgtttataatttttgtttcttgcaactagGTAACTGGTTGGGTTGTTGAATACCAAGACAATCTAATTGGGCTTGGTGTTGATGATTCTTTAGCTCAAGTGTGTTCTGAGAGTGGTGCTATGGATCCTC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv12s0034g02360.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: LOC_Os02g51430.2 (Oryza sativa), 3'ss of exon 12
--------------------------------------------------------ttatcatagaacttttatcactgtttgt-ccttgtttttttagtttt-----tttcccttttatcatcataattttttgtttat-----aatttttgttt--cttgcaact--agGTAACTGGTTGGGTTGTTGAATACCAAGACAATCTAATTGGGCTTGGTGTTGATGATTCTTTAGCTCAAGTGTGTTCTGAGAGTGGTGCTATGGATCCTC
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gtatatgaattcaaatgccatcgttttattctgctaaatttactttccacaagatgaaatgtgaaaaccgcaagcattgtcagcattttgttttccttgattcatgaatatcacttgtttggtt-tgctttctcgtatattgcaaaatcattaaatgaatggtcactgtagGTAACAGGTTGGGTTGTGAAATACCAAGAAAATCTTATCGGTCTTGGTGTGGACGAGTCTCTTGCCCAAGTTTGTTCAGAAAGTGGTGCATTGGATCCCC
upper sequence: Vv12s0034g02360.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: GLYMA03G03120.1 (Glycine max), 3'ss of exon 14
--ttatcatagaacttttatcactgtttgtccttgtttttttagtttttttcccttttatcatcataattttttgtttataatttttgtttcttgc-aactagGTAACTGGTTGGGTTGTTGAATACCAAGACAATCTAATTGGGCTTGGTGTTGATGATTCTTTAGCTCAAGTGTGTTCTGAGAGTGGTGCTATGGATCCTC
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agtcatcattg--tttttcttgttctctatattttctttttctcccgctgaatgttttatgggaa-aattatacatctatgcttatgtttttttatgaagcagGTAACTGGATGGGTGGTTGAATACCAAGATAATCTGATTGGGCTTGGAGTCGATGAGTCTCTAGCCCAAGTGTGTTCTGAGAGTGGTGCAATGGATCCTC
upper sequence: Vv12s0034g02360.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: AT1G71820.2 (Arabidopsis thaliana), 3'ss of exon 14
---ttatcatagaacttttatcactgtttgtccttgtttttttagtttttttcccttttatcatcataattttttgtttataatttttgtttcttgcaactagGTAACTGGTTGGGTTGTTGAATACCAAGACAATCTAATTGGGCTTGGTGTTGATGATTCTTTAGCTCAAGTGTGTTCTGAGAGTGGTGCTATGGATCCTC
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gcctcatcaaaatgcctcattcgtttttta-ccttgtctctgtgcattaggtatcctttag-agagtgatgtatcttttctt-tctctcttcgatcttgctagGTGACTGGTTGGGTGGTAGAGTACCAAGAAAACTTGATTGCACTTGGTGTTGATGATTCACTAGCTCAAGTGTGTTCTGAGAGCGGTTCAATGGATCCTC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttttcccttttatcatcataattttttgtttataatttttgtttcttgcaactagGTAACTGGTTGGGTTGTTGAATACCAAGACAATCTAATTGGGCTTGGTGTTGATGATTCTTTAGCTCAAGTGTGTTCTGAGAGTGGTGCTATGGATCCTC
tttttgtttcttgc CT-rich tract
ttttatcatcataatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ttatcatagaacttttatcactgtttgtccttgtttttttagtttttttcccttttatcatcataattttttgtttataatttttgtttcttgcaactagGTAACTGGTTGGGTTGTTGAATACCAAGACAATCTAATTGGGCTTGGTGTTGATGATTCTTTAGCTCAAGTGTGTTCTGAGAGTGGTGCTATGGATCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - ctgtttg