1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' |
gtaaaatgtgtgaatttcacataaagaataaaataagataaaataaaacaaaaaaaaggacttacaagtccatgttggtgtgaaattcattggtttttccttgttgcagGACAAGCTAATGACAGTGGCTTCAGAAGCTTCCAGTGGTGGTTCTTCAGGAAATTGGCTTTTTAAGAATAAAGAACATGGGAAAGCCAGTGCTGCAGCAA
species | Vitis vinifera |
transcript | Vv12s0028g03130.t01 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: ACCTGGCAGCTACTTTTGTCAATGCATTTGTAAATGCTGGTTTTGGACAG GACAAGCTAATGACAGTGGCTTCAGAAGCTTCCAGTGGTGGTTCTTCAGGAEST: gi|71864029|gb|DT013084.1|DT013084
genomic: ACCTGGCAGCTACTTTTGTCAATGCATTTGTAAATGCTGGTTTTGGACAGgtaaaatgtg ... cttgttgcagGACAAGCTAATGACAGTGGCTTCAGAAGCTTCCAGTGGTGGTTCTTCAGGA
EST: ACCTGGCAGCTACTTTTGTCAATGCATTTGTAAATGCTGGTTTTGGACAG GACAAGCTAATGACAGTGGCTTCAGAAGCTTCCAGTGGTGGTTCTTCAGGAEST: gi|30304206|gb|CB981000.1|CB981000
genomic: ACCTGGCAGCTACTTTTGTCAATGCATTTGTAAATGCTGGTTTTGGACAGgtaaaatgtg ... cttgttgcagGACAAGCTAATGACAGTGGCTTCAGAAGCTTCCAGTGGTGGTTCTTCAGGA
EST: ACCTGGCAGCTACTTTTGTCAATGCATTTGTAAATGCTGGTTTTGGACAG GACAAGCTAATGACAGTGGCTTCAGAAGCTTCCAGTGGTGGTTCTTCAGGAEST: gi|71860625|gb|DT009680.1|DT009680
genomic: ACCTGGCAGCTACTTTTGTCAATGCATTTGTAAATGCTGGTTTTGGACAGgtaaaatgtg ... cttgttgcagGACAAGCTAATGACAGTGGCTTCAGAAGCTTCCAGTGGTGGTTCTTCAGGA
EST: ACCTGGCAGCTACTTTTGTCAATGCATTTGTAAATGCTGGTTTTGGACAG GACAAGCTAATGACAGTGGCTTCAGAAGCTTCCAGTGGTGGTTCTTCAGGAEST: gi|71863903|gb|DT012958.1|DT012958
genomic: ACCTGGCAGCTACTTTTGTCAATGCATTTGTAAATGCTGGTTTTGGACAGgtaaaatgtg ... cttgttgcagGACAAGCTAATGACAGTGGCTTCAGAAGCTTCCAGTGGTGGTTCTTCAGGA
EST: ACCTGGCAGCTACTTTTGTCAATGCATTTGTAAATGCTGGTTTTGGACAG GACAAGCTAATGACAGTGGCTTCAGAAGCTTCCAGTGGTGGTTCTTCAGGA
genomic: ACCTGGCAGCTACTTTTGTCAATGCATTTGTAAATGCTGGTTTTGGACAGgtaaaatgtg ... cttgttgcagGACAAGCTAATGACAGTGGCTTCAGAAGCTTCCAGTGGTGGTTCTTCAGGA
aaaggacttacaagtccatgttggtgtgaaattcattggtttttccttgttgcagGACAAGCTAATGACAGTGGCTTCAGAAGCTTCCAGTGGTGGTTCTTCAGGAAATTGGCTTTTTAAGAATAAAGAACATGGGAAAGCCAGTGCTGCAGCAA
gacttac putative branch site (score: 2)
tttttccttgttgc putative PPT
aaattcatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaaatgtgtgaatttcacataaagaataaaataagataaaataaaacaaaaaaaaggacttacaagtccatgttggtgtgaaattcattggtttttccttgttgcagGACAAGCTAATGACAGTGGCTTCAGAAGCTTCCAGTGGTGGTTCTTCAGGAAATTGGCTTTTTAAGAATAAAGAACATGGGAAAGCCAGTGCTGCAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG