Sequence
atgc intronic sequence ATGC exonic sequence...catgccatttccccatgtcactgttgctcaggttagtagggagtgatattatcttttttggcaattgtagccttatgtatgcttttatctgtttttgcagCTTATGCTAAGTTTCGAGGTCCTCTTGGAAATGTCAGGAAAGGAGTATTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv12s0028g02640.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: GLYMA12G14080.1 (Glycine max), 3'ss of exon 13
----catgccatttccccatgtcactgttgctcaggttagtagggagtgatattatcttttttggcaattgtagccttatgtatgcttttatctgt--ttttgcagCTTATGCTAAGTTTCGAGGTCCTCTTGGAAATGTCAGGAAAGGAGTATTG
||| || || | || || || || || ||| | |||| | ||||| | | || |||| ||| ||| ||| | ||||||| |||| || |||||||| |||||||| |||||||||||||||||| ||
tgtttgagcctttccctcttg-caatgcagcatagtttatc---gtctgatgtc--ttttttaagtattttattttttataattgcattttattgtaatgttgcagCATATGAAAATTTTCGAGGCCCTCTTGGCAATGTCAGGAAAGGAGTACTG
upper sequence: Vv12s0028g02640.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: GLYMA06G43820.1 (Glycine max), 3'ss of exon 13
catgccatttccccatgtcactgttgct---caggttagtagggagtgatattatcttttttggcaattgtagccttatgtatgcttttatctgt--ttttgcagCTTATGCTAAGTTTCGAGGTCCTCTTGGAAATGTCAGGAAAGGAGTATTG
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-actttgtttgagcctttccctcttgatatactgcttagtttagtgtcagat-gtctttttt---aattatttttttataattgcattttattgtaatgttgcagCATATGAAAAATTTCGAGGCCCGCTTGGCAATGTCAGGAAAGGAGTACTG
upper sequence: Vv12s0028g02640.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: AT2G31060.1 (Arabidopsis thaliana), 3'ss of exon 12
---catgccatttccccatgtcactgttgctcaggttag-tagggagtgatattatcttttttggcaattgtagccttatgtatgcttttatctgtttttgcagCTTATGCTAAGTTTCGAGGTCCTCTTGGAAATGTCAGGAAAGGAGTATTG
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gatccaaacatatctgtctggtagttagaagcatcttaggttttacgttttattacattcttcttcaattg-attgctgtttgtgtatcg---cgttcttgcagCTTATGAAAAGTACCGAGGTCCGCTTGGAAATGTTAGGAAAGGAGTATTGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110366463|gb|EC930369.1|EC930369EST: GTTTAGCAGTGACACACGTGGCACTGGATTTATGCATCGTGCTTTCTTAA CTTATGCTAAGTTTCGAGGTCCTCTTGGAAATGTCAGGAAAGGAGTATTG
genomic: GTTTAGCAGTGACACACGTGGCACTGGATTTATGCATCGTGCTTTCTTAAgtatgtttat ... gtttttgcagCTTATGCTAAGTTTCGAGGTCCTCTTGGAAATGTCAGGAAAGGAGTATTG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atattatcttttttggcaattgtagccttatgtatgcttttatctgtttttgcagCTTATGCTAAGTTTCGAGGTCCTCTTGGAAATGTCAGGAAAGGAGTATTG
cttttatctgttttt CT-rich tract
ttttatctgttttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
catgccatttccccatgtcactgttgctcaggttagtagggagtgatattatcttttttggcaattgtagccttatgtatgcttttatctgtttttgcagCTTATGCTAAGTTTCGAGGTCCTCTTGGAAATGTCAGGAAAGGAGTATTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
catgcca
- - - -tttcccc
- - - - - - - - - - -tgttgct
- - - - - - - - - - - - - - - - - - - gggagtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtagcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtatgct