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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtataaattgtgaagctatcaatcatgcattttgtatgatgctttttttcctgtagagtattgatgagagaattgaaactttttgcagGTATATACAGTATTGTCGAACCGAATGTCATCCTCGCCTGTCAGATTCTGCATCCACAATGTTGCAGAATAATTATGTCAAAATCAGACAG

Basic information

species Vitis vinifera
transcript Vv11s0149g00130.t01
intron # 13
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv11s0149g00130.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: GLYMA17G11220.1 (Glycine max), 3'ss of exon 13
----gtataaattgtgaagctatcaatcatgcattttgtatgatgctttttttcctgtagagtattgatgagagaattgaaactttttgcagGTATATACAGTATTGTCGAACCGAATGTCATCCTCGCCTGTCAGATTCTGCATCCACAATGTTGCAGAATAATTATGTCAAAATCAGACAG
    | |  |  | ||||  || || |    | |||  |    | ||||   || | |     | |||     ||  |   | | |    |||||| |||| |||||||||||  |||| || ||||| || || || || ||| | ||| | ||||||||| ||||||| ||||||||||||
gtatgcaatatctatgaacttagcagtgg-acttttcatccagttctttcaatcatttgagagaatgaactttgagctttta-tctaaatagGTATTTACAATATTGTCGAACTCAATGCCACCCTCGTCTATCTGAATCAGCAACAACATTATTGCAGAATCATTATGTGAAAATCAGACAG

upper sequence: Vv11s0149g00130.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: GLYMA13G22420.1 (Glycine max), 3'ss of exon 13
----gtataaattgtgaagctatcaatcatgcattttgtatgatgctttttttcctgtagagtattgatgagagaattgaaactttttgcagGTATATACAGTATTGTCGAACCGAATGTCATCCTCGCCTGTCAGATTCTGCATCCACAATGTTGCAGAATAATTATGTCAAAATCAGACAG
    | |  |  | ||||  || |  |    | ||| ||    | ||||   || | |     | |||     ||  ||  | | |    |||||| | || |||||||||||  |||| || ||||| || ||||| || ||| | ||| | ||||||||| ||||||| ||||||||||||
gtatgcaatacctatgaacttagccgttg-acttttcgttcagttctttcaatcatttgagagaatgaactttgagctgtta-tctaaatagGTATTTGCAATATTGTCGAACTCAATGCCACCCTCGTCTATCAGAATCAGCAACAACATTATTGCAGAATCATTATGTGAAAATCAGACAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtatgatgctttttttcctgtagagtattgatgagagaattgaaactttttgcagGTATATACAGTATTGTCGAACCGAATGTCATCCTCGCCTGTCAGATTCTGCATCCACAATGTTGCAGAATAATTATGTCAAAATCAGACAG
                         tattgat  putative branch site (score: 3)
                                             ctttttgc  putative PPT
                                     aattgaaacttttt  TA-rich tract