1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
...tttttgtacaattatatattaaaagcaatgttatggatacatgttcttttaatctacagttttggttgaaagcataattccatttccttttctatttcagTTAATCAATCCTGCTGAAACTTTTGGCGACATTGTTATTGATTATCC
species | Vitis vinifera |
transcript | Vv11s0065g00640.t01 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: GCAACCTATGAACTCACTAGATCTTATGCTTGGTTGGAG -TAATCAATCCTGCTGAAACTTTTGGCGACATTGTTATTGATTACCCEST: gi|71865816|gb|DT014871.1|DT014871
genomic: GCAACCTATGAACTCACTAGATCTTATGCTTGGTTGGAGgtagcctcta ... tctatttcagTTAATCAATCCTGCTGAAACTTTTGGCGACATTGTTATTGATTATCC
EST: ATGGCGGCTTTGCAACCTATGAACTCACTAGATCTTATGCTTGGTTGGAG TTAATCAATCCTGCTGAAACTTTTGGCGACATTGTTATTGATTACCCEST: gi|32248816|gb|CD714635.1|CD714635
genomic: ATGGCGGCTTTGCAACCTATGAACTCACTAGATCTTATGCTTGGTTGGAGgtagcctcta ... tctatttcagTTAATCAATCCTGCTGAAACTTTTGGCGACATTGTTATTGATTATCC
EST: ATGGCGGCTTTGCAACCTATGAACTCACTAGATCTTATGCTTGGTTGGAG TTAATCAATCCTGCTGAAACTTTTGGCGACATTGTTATTGATTACCCEST: gi|161713441|gb|FC063719.1|FC063719
genomic: ATGGCGGCTTTGCAACCTATGAACTCACTAGATCTTATGCTTGGTTGGAGgtagcctcta ... tctatttcagTTAATCAATCCTGCTGAAACTTTTGGCGACATTGTTATTGATTATCC
EST: ATGGCGGCTTTGCAACCTATGAACTCACTAGATCTTATGCTTGGTTGGAG TTAATCAATCCTGCTGAAACTTTTGGCGACATTGTTATTGATTATCCEST: gi|30327265|gb|CD010527.1|CD010527
genomic: ATGGCGGCTTTGCAACCTATGAACTCACTAGATCTTATGCTTGGTTGGAGgtagcctcta ... tctatttcagTTAATCAATCCTGCTGAAACTTTTGGCGACATTGTTATTGATTATCC
EST: ATGGCGGCTTTGCAACCTATGAACTCACTAGATCTTATGCTTGGTTGGAG TTAATCAATCCTGCTGAAACTTTTGGCGACATTGTTATTGATTACCCEST: gi|161717232|gb|FC067238.1|FC067238
genomic: ATGGCGGCTTTGCAACCTATGAACTCACTAGATCTTATGCTTGGTTGGAGgtagcctcta ... tctatttcagTTAATCAATCCTGCTGAAACTTTTGGCGACATTGTTATTGATTATCC
EST: GAACTCACTAGATCTTATGCTTGGTTGGAG TTAATCAATCCTGCTGAAACTTTTGGCGACATTGTTATTGATTATCCEST: gi|32249043|gb|CD714862.1|CD714862
genomic: GAACTCACTAGATCTTATGCTTGGTTGGAGgtagcctcta ... tctatttcagTTAATCAATCCTGCTGAAACTTTTGGCGACATTGTTATTGATTATCC
EST: ATGGCGGCTTTGCAACCTATGAACTCACTAGATCTTATGCTTGGTTGGAG TTAATCAATCCTGCTGAAACTTTTGGCGACATTGTTATTGATTACCCEST: gi|32269610|gb|CD718769.1|CD718769
genomic: ATGGCGGCTTTGCAACCTATGAACTCACTAGATCTTATGCTTGGTTGGAGgtagcctcta ... tctatttcagTTAATCAATCCTGCTGAAACTTTTGGCGACATTGTTATTGATTATCC
EST: ATGGCGGCTTTGCAACCTATGAACTCACTAGATCTTATGCTTGGTTGGAG TTAATCAATCCTGCTGAAACTTTTGGCGACATTGTTATTGATTACCCEST: gi|30327518|gb|CD010780.1|CD010780
genomic: ATGGCGGCTTTGCAACCTATGAACTCACTAGATCTTATGCTTGGTTGGAGgtagcctcta ... tctatttcagTTAATCAATCCTGCTGAAACTTTTGGCGACATTGTTATTGATTATCC
EST: ATGGCGGCTTTGCAACCTATGAACTCACTAGATCTTATGCTTGGTTGGAG TTAATCAATCCTGCTGAAACTTTTGGCGACATTGTTATTGATTACCCEST: gi|161713540|gb|FC063135.1|FC063135
genomic: ATGGCGGCTTTGCAACCTATGAACTCACTAGATCTTATGCTTGGTTGGAGgtagcctcta ... tctatttcagTTAATCAATCCTGCTGAAACTTTTGGCGACATTGTTATTGATTATCC
EST: ATGGCGGCTTTGCAACCTATGAACTCACTAGATCTTATGCTTGGTTGGAG TTAATCAATCCTGCTGAAACTTTTGGCGACATTGTTATTGATTACCC
genomic: ATGGCGGCTTTGCAACCTATGAACTCACTAGATCTTATGCTTGGTTGGAGgtagcctcta ... tctatttcagTTAATCAATCCTGCTGAAACTTTTGGCGACATTGTTATTGATTATCC
cttttaatctacagttttggttgaaagcataattccatttccttttctatttcagTTAATCAATCCTGCTGAAACTTTTGGCGACATTGTTATTGATTATCC
ttttaat putative branch site (score: 3)
ttccatttccttttct putative PPT
ttttctattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttttgtacaattatatattaaaagcaatgttatggatacatgttcttttaatctacagttttggttgaaagcataattccatttccttttctatttcagTTAATCAATCCTGCTGAAACTTTTGGCGACATTGTTATTGATTATCC
- - - - - - - - - - -aaagcaa
- - - - - - - - - - - - - - - - - - - -catgttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaagca