Sequence
atgc intronic sequence ATGC exonic sequence...ttcaagtatgtttagcagtttaataatgtgttactctcttcatctttttctttgtcatggttaacttaagacagtaatacaataatgggtttaactgcagGCGTCGATAATGTCTAAACATCTTGCTAAGTCTGAGAGGCCAAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv11s0052g00890.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: GLYMA13G00980.1 (Glycine max), 3'ss of exon 13
--ttcaagtatgtttagcagtttaataatgtgttactctcttcatctttttctttgtcatggttaacttaagacagtaatacaataatgggtttaactgcagGCGTCGATAATGTCTAAACATCTTGCTAAGTCTGAGAGGCCAAG
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caatctaat-tgcctgacagtattttttagtgttaatttttatttaataatgcattttaaatttaaggta-gagaaccatgtgatgatgtgttgtattgcagGCATCAATAATGTCTAAACATCTTGCAAAATCTGACAGGCCAAG
upper sequence: Vv11s0052g00890.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: GLYMA17G07040.2 (Glycine max), 3'ss of exon 13
-----ttcaagtatgtttagcagtttaataatgtgttactctcttcatctttttctttgtcatggttaacttaagacagtaatacaataatgggtttaactgcagGCGTCGATAATGTCTAAACATCTTGCTAAGTCTGAGAGGCCAAG--------------------------------------------------------
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ttgcctgaaagtatttttaagtgttgatt--tgtgttaatttatattgataatgcatt--caattttaaggta-gagaataatgtgataatgtgttgtattacagGCATCAATAATGTCTAAACATCTTGCAAAATCTGACAGGCCAAGGTACTCAGTGTACTTTTGATTTGTTAAGAACCATTTAATTATGTATAGATGCAATA
upper sequence: Vv11s0052g00890.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: GLYMA17G07040.1 (Glycine max), 3'ss of exon 13
-----ttcaagtatgtttagcagtttaataatgtgttactctcttcatctttttctttgtcatggttaacttaagacagtaatacaataatgggtttaactgcagGCGTCGATAATGTCTAAACATCTTGCTAAGTCTGAGAGGCCAAG
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ttgcctgaaagtatttttaagtgttgatt--tgtgttaatttatattgataatgcatt--caattttaaggta-gagaataatgtgataatgtgttgtattacagGCATCAATAATGTCTAAACATCTTGCAAAATCTGACAGGCCAAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttttctttgtcatggttaacttaagacagtaatacaataatgggtttaactgcagGCGTCGATAATGTCTAAACATCTTGCTAAGTCTGAGAGGCCAAG
gtttaac putative branch site (score: 3)
agtaatacaataat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ttcaagtatgtttagcagtttaataatgtgttactctcttcatctttttctttgtcatggttaacttaagacagtaatacaataatgggtttaactgcagGCGTCGATAATGTCTAAACATCTTGCTAAGTCTGAGAGGCCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
-tcaagta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aagacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acaataa