Sequence
atgc intronic sequence ATGC exonic sequence...tgtatccatatgtaattttacatttgaatcttcttcttctctctctctctctcttttatttatttttttttcccattcaaaattttccctttttccatagGTGACGTTGGCTGCTCTTGGAGAGATATTCCAAGCTGCACGTGACATTATGGCTTGGCTTGGTGAATGTGCAAAA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv11s0037g00630.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: GLYMA06G24890.1 (Glycine max), 3'ss of exon 6
----tgtatccatatgtaattttacatttgaatcttcttcttctctctctctctctc-ttttatttatttttttttcccattcaaaattttccctttttccatagGTGACGTTGGCTGCTCTTGGAGAGATATTCCAAGCTGCACGTGACATTATGGCTTGGCTTGGTGAATGTGCAAAA
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cttatacattc-tatcaggtttcttaatgcattcaaattctcttatcattctggttcatatcaggtagtttgatcaacattttcaaacttaa----tttctatagGTGACATTGGCTGCCCTTGGAGAAGTTTTTGAAGCTGCACGTGGCATTATGGGTTGGCTTGGAGATTGTGCAAAG
upper sequence: Vv11s0037g00630.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: GLYMA04G24350.1 (Glycine max), 3'ss of exon 8
----tgtatccatatgtaattttacatttgaatcttcttcttctctctctctctctcttttatttatttttttttcccattcaaaattttccctttttccatagGTGACGTTGGCTGCTCTTGGAGAGATATTCCAAGCTGCACGTGACATTATGGCTTGGCTTGGTGAATGTGCAAAA
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cttatgcattc-catcaggttttttgatgtattcaaatgctcttatcattctggttattattaggaagtttgattgacattttcaaacttaa---tttctgtagGTGACATTGGCTGCCCTTGGAGAAGTTTTTGAAGCTGCACGTGGCATCATGGGTTGGCTTGGGGATTGTGCAAAG
upper sequence: Vv11s0037g00630.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: GLYMA17G07940.1 (Glycine max), 3'ss of exon 13
tgtatccatatgtaattttacatttgaatcttc-ttcttctctctctctctctcttttatttatttttttttcccattcaaaattttccc-tttttccatagGTGACGTTGGCTGCTCTTGGAGAGATATTCCAAGCTGCACGTGACATTATGGCTTGGCTTGGTGAATGTGCAAAA
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--aatatatgagtggaaatgcatgtgaaccaacatgcaaagacatgcttatacaataaatctgctttcttgtcttatattttatactcttatcattctatagGTGACATTAACTGCGCTTGGAGAAATTTTTGGTGCTGCACGTGTCATTATGGGTTGGCTTGGTGATTGTGCAAAG
upper sequence: Vv11s0037g00630.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: AT2G24120.2 (Arabidopsis thaliana), 3'ss of exon 13
tgtatccatatgtaattttacatttgaatcttcttcttctctctctctctctcttttatttatttttt--tttcccattcaaaattttccctttttccatagGTGACGTTGGCTGCTCTTGGAGAGATATTCCAAGCTGCACGTGACATTATGGCTTGGCTTGGTGAATGTGCAAAA
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-------gtaagaaga---atagtggcattcacgcggataaatgttattttgtttttagctatgtactaatgttatacttgaaa-----catttctcctcagGTGACGCTAGCTGCCCTTGGAGAGATATTTGAAGCGGCACGTGCCATTATGAGTTGGCTTGGTGATTGTGCAAAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tctctctcttttatttatttttttttcccattcaaaattttccctttttccatagGTGACGTTGGCTGCTCTTGGAGAGATATTCCAAGCTGCACGTGACATTATGGCTTGGCTTGGTGAATGTGCAAAA
tttttttttcccattc CT-rich tract
tcttttatttattttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tgtatccatatgtaattttacatttgaatcttcttcttctctctctctctctcttttatttatttttttttcccattcaaaattttccctttttccatagGTGACGTTGGCTGCTCTTGGAGAGATATTCCAAGCTGCACGTGACATTATGGCTTGGCTTGGTGAATGTGCAAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - -ccatatg
- - - - - - - - - - - - - - -cttcttc