Sequence
atgc intronic sequence ATGC exonic sequence...aaattgacctaccttctcaaaagcccttggtcaatgcaaataatgtttcaagattctcttgttatagactctaatttgttatcattttatgttctttcagTCGATAGATGTAATGGACTACTCATTACTGGTTGGGGTGGATGAGGAAAAGCATGAACTGGTCCTTGGGATAATCGACTTTATGCGGCAATATACCTGGG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv11s0016g00360.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: GLYMA17G05000.1 (Glycine max), 3'ss of exon 14
aaattgacctaccttctcaaaagcccttggtcaatgcaaataatgtttcaagattctcttgttatagactcta------atttgttatcatttta--tgttctttcagTCGATAGATGTAATGGACTACTCATTACTGGTTGGGGTGGATGAGGAAAAGCATGAACTGGTCCTTGGGATAATCGACTTTATGCGGCAATATACCTGGG
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---ctaacatat-tccttaaaatcaagtgg---gagtatatta-gcctccagatgcattaattagagtgcatatgaaacatccattaatattgtacatattgttgcagTCAATATATGTGATGGACTACTCATTGCTGGTTGGAGTGGATGAGGAAAAGCATGAGCTGGTTTTAGGTATCATTGATTTTATGAGGCAGTATACATGGG
upper sequence: Vv11s0016g00360.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: GLYMA13G17510.1 (Glycine max), 3'ss of exon 10
aaattgacctaccttctcaaaagcccttggtcaatgcaaataatgtttcaagattctcttgttatagactctaatttgttatcat---tttatgttctttcagTCGATAGATGTAATGGACTACTCATTACTGGTTGGGGTGGATGAGGAAAAGCATGAACTGGTCCTTGGGATAATCGACTTTATGCGGCAATATACCTGGG
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---cctaaaaaacaagtgggagtgtattagcatccaaatgcattagttagagttcatgtgcctgtaaaacatccattaatattgtgcatattgattgttgcagTCAATATATGTGATGGACTACTCATTGCTGGTTGGCGTGGATGAGGAAAAGCATGAGTTGGTTTTAGGTATCATTGATTTTATGAGGCAGTATACATGGGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110368632|gb|EC932620.1|EC932620EST: GGTTGCTAGAGAGAGCTGTTTGGAATGATACTTCATTTCTTGCT TCGATAGATGTAATGGACTACTCATTACTGGTTGGGGTGGATGAGGAAAAG
genomic: GGTTGCTAGAGAGAGCTGTCTGGAATGATACTTCATTTCTTGCTgtaagttcag ... gttctttcagTCGATAGATGTAATGGACTACTCATTACTGGTTGGGGTGGATGAGGAAAAG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tttcaagattctcttgttatagactctaatttgttatcattttatgttctttcagTCGATAGATGTAATGGACTACTCATTACTGGTTGGGGTGGATGAGGAAAAGCATGAACTGGTCCTTGGGATAATCGACTTTATGCGGCAATATACCTGGG
ctctaat putative branch site (score: 3)
ttttatgttctttc putative PPT
taatttgttatcattt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
aaattgacctaccttctcaaaagcccttggtcaatgcaaataatgtttcaagattctcttgttatagactctaatttgttatcattttatgttctttcagTCGATAGATGTAATGGACTACTCATTACTGGTTGGGGTGGATGAGGAAAAGCATGAACTGGTCCTTGGGATAATCGACTTTATGCGGCAATATACCTGGG
aaattga
- - - - - -ccttctc
- - - - - - - - - aaaagcc
- - - - - - - - - - - - - - - -caatgca