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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaattgccgaataaacttatcattcagtgtcgtactctgccttgaaagtgttccagaaaagtaacatttgtatttccttttaacagATTTGGGCAGGGCCCCTTTCAGACTATAGGGTAGCTTTACTCCTGGTCAATCGGGGTCCTTGGCGTTATTCCGTAACGGCCAACTGGGATGATATTGGAC

Basic information

species Vitis vinifera
transcript Vv10s0071g01100.t01
intron # 13
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110702413|gb|EE081097.1|EE081097
EST:     ATCCTCTAGGTGTTCAAGCTAAAAAGGTTAGGAGTGAAGGTGATCAGGAG                         ATTTGGGCAGGACCCCTTTCAGACTATAGGGTAGCTTTACTCCTGGTCAAT
genomic: ATCCTCTAGGTGTTCAAGCTAAAAAGGTTAGGAGTGAAGGTGATCAGGAGgtaaaattgc ... cttttaacagATTTGGGCAGGGCCCCTTTCAGACTATAGGGTAGCTTTACTCCTGGTCAAT
EST: gi|34362870|gb|CF404455.1|CF404455
EST:     ATCCTCTAGGTGTTCAAGCTAAAAAGGTTAGGAGTGAAGGTGATCAGGAG                         ATTTGGGCAGGACCCCTTTCAGACTATAGGGTAGCTTTACTCCTGGTCAAT
genomic: ATCCTCTAGGTGTTCAAGCTAAAAAGGTTAGGAGTGAAGGTGATCAGGAGgtaaaattgc ... cttttaacagATTTGGGCAGGGCCCCTTTCAGACTATAGGGTAGCTTTACTCCTGGTCAAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtactctgccttgaaagtgttccagaaaagtaacatttgtatttccttttaacagATTTGGGCAGGGCCCCTTTCAGACTATAGGGTAGCTTTACTCCTGGTCAATCGGGGTCCTTGGCGTTATTCCGTAACGGCCAACTGGGATGATATTGGAC
                           aagtaac  putative branch site (score: 2)
                                   tttgtatttcctttt  CT-rich tract
                              taacatttgtattt  TA-rich tract