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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactcgctattgttcgacccaacttcaataggtgtatgtatatatcattttttttgtctcatttatcagttatttgcctgcagACTGTTGCTCTAGTTGGAGAGAGTGGTAGTGGAAAGTCGACAGTAATCAGCCTACTAGAGAGATTCTACAATCCTGATTCCGGTCATATATTACTGGATG

Basic information

species Vitis vinifera
transcript Vv10s0003g02570.t01
intron # 13
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv10s0003g02570.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: LOC_Os01g50080.1 (Oryza sativa), 3'ss of exon 9
-------gtactcgctattgttcgacccaacttcaataggtgtatgta--tatatcattttttttgtct---cat-ttatcagttatttgcc---tgcagACTGTTGCTCTAGTTGGAGAGAGTGGTAGTGGAAAGTCGACAGTAATCAGCCTACTAGAGAGATTCTACAATCCTGATTCCGGTCATATATTACTGGATG
        |      ||    |    | || |||  ||  | ||| |   | ||| |||    ||||     |||  ||| |   | ||| |   ||||||||||||| || ||||||||||| || ||||||||||| ||||||||     | || ||| |||||||  | ||  |||| ||    || | ||| ||  
ctttcaaatgaaaattaccaataatacaaatttctctatatttattttcctttataattaaacttgtactgacatgctataaaccaattgtcatatgcagACTGTTGCACTTGTTGGAGAGAGCGGCAGTGGAAAGTCCACAGTAATTGCTTTGCTGGAGCGATTCTATGACCCACATTCTGGCACAATCTCACTAGACA

upper sequence: Vv10s0003g02570.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: LOC_Os01g50160.1 (Oryza sativa), 3'ss of exon 11
gtactcgctattgttcgacccaacttcaataggtgtatgta-tatatcattttttttgtctcatttatcagttatttgcctgcagACTGTTGCTCTAGTTGGAGAGAGTGGTAGTGGAAAGTCGACAGTAATCAGCCTACTAGAGAGATTCTACAATCCTGATTCCGGTCATATATTACTGGATG
    |  | | | |     |    | || ||| | ||| |  |  || |   | |    |  | |||  |  |   |   ||||||| ||||| || ||||||||||||||||| |||||||| |||| ||||    | |||||| ||||||||||||| || || ||    || ||  ||||||
--gttatccaatttatatgcttgttgca-tagttatattttctgcattaacatatccagca-acttactatatggatttatgcagACCGTTGCACTTGTTGGAGAGAGTGGTAGCGGAAAGTCCACAGCAATCGCTTTGCTAGAGCGATTCTACAATCCCGAGTCAGGAACCATCTTGTTGGATG

upper sequence: Vv10s0003g02570.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: AC233882.1_FGT003 (Zea mays), 3'ss of exon 13
------gtactcgctattgttcgacccaacttcaataggtgtatgtatatatcattttttttgtctcatttatcagtta----------tttgcctgcagACTGTTGCTCTAGTTGGAGAGAGTGGTAGTGGAAAGTCGACAGTAATCAGCCTACTAGAGAGATTCTACAATCCTGATTCCGGTCATATATTACTGGATG
        |   ||        ||  |||  | | |   ||| |  | || |   ||| | | |   | | || |  |           ||    ||||||||||||| || |||||||||||||||||||| ||||| ||| ||||     | || |||||||||||| |||| ||||| |||   || | ||||||||
caatcaaaatgagcctgaaaaagaatcaaaattagttcttgttttcacattttcctttatgttttgtactgatgaacttaaaactaaatttcatatgcagACTGTTGCACTTGTTGGAGAGAGTGGTAGTGGTAAGTCAACAATAATTTCTTTGCTCGAGAGATTCTACGATCCAGATTCTGGTACAATCTCACTGGATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taggtgtatgtatatatcattttttttgtctcatttatcagttatttgcctgcagACTGTTGCTCTAGTTGGAGAGAGTGGTAGTGGAAAGTCGACAGTAATCAGCCTACTAGAGAGATTCTACAATCCTGATTCCGGTCATATATTACTGGATG
                                            tttgcct  CT-rich tract
          tatatatcattttttt  TA-rich tract