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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtctttcctagtcagtttattatctgctaacgtcaaactatattgctgggtggtgggttggattttcatttcatttttatttccatgcagTTCAATGATTTTCTCAATACCATCTTCTTCTCGTCCCCAACGGTTGCATTAATCGTCGCTATTTTCCTAGACAACACACTTGACTACAAGGACAGCGCCA

Basic information

species Vitis vinifera
transcript Vv10s0003g01460.t01
intron # 13
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv10s0003g01460.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: GLYMA08G12360.1 (Glycine max), 3'ss of exon 14
--gtgagtctttcctagtcagtttattatctgctaacgt-caaactatattgctgggtggtgggt---tggattttcatttcatttttatttccatgcagTTCAATGATTTTCTCAATACCATCTTCTTCTCGTCCCCAACGGTTGCATTAATCGTCGCTATTTTCCTAGACAACACACTTGACTACAAGGACAGCGCCA
   | |     |  |    |  ||   ||    || | | ||   | | ||  |||    |       || | ||   ||||  |  | |     |||||||||||||||| || |||||||| ||||| || ||||||||||||||||| || || ||| | ||  | |||||||| |||||||||||||| || ||||
tcttaaactaatttttaggaccttgacatacattagccttcattgttttttcatggacattataataatgaaattaagtttctgtcctttggttttgcagTTCAATGATTTCCTTAATACCATATTCTTTTCTTCCCCAACGGTTGCATTGATTGTTGCTGTGTTTTTGGACAACACTCTTGACTACAAGGATAGTGCCA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110423240|gb|EC989581.1|EC989581
EST:     AATACACCTCTGCTGCCCTTCATGGTCCTGCTCATACAAGGGCTGGATGG                         TTCAATGATTTTCTCAATACCATCTTCTTCTCGTCCCCAACGGTTGCATTA
genomic: AATACACCTCTGCTGCCCTTCATGGTCCTGCTCATACAAGGGCTGGATGGgtgagtcttt ... ttccatgcagTTCAATGATTTTCTCAATACCATCTTCTTCTCGTCCCCAACGGTTGCATTA
EST: gi|30252279|gb|CB969830.1|CB969830
EST:     AATACACCTCTGCTGCCCTTCATGGTCCTGCTCATACAAGGGCTGGATGG                         TTCAATGATTTCCTCAATACCATCTTCTTCTCGTCCCCAACGGTTGCATTA
genomic: AATACACCTCTGCTGCCCTTCATGGTCCTGCTCATACAAGGGCTGGATGGgtgagtcttt ... ttccatgcagTTCAATGATTTTCTCAATACCATCTTCTTCTCGTCCCCAACGGTTGCATTA
EST: gi|30252280|gb|CB969831.1|CB969831
EST:     AATACACCTCTGCTGCCCTTCATGGTCCTGCTCATACAAGGGCTGGATGG                         TTCAATGATTTCCTCAATACCATCTTCTTCTCGTCCCCAACGGTTGCATTA
genomic: AATACACCTCTGCTGCCCTTCATGGTCCTGCTCATACAAGGGCTGGATGGgtgagtcttt ... ttccatgcagTTCAATGATTTTCTCAATACCATCTTCTTCTCGTCCCCAACGGTTGCATTA
EST: gi|30252292|gb|CB969843.1|CB969843
EST:     AATACACCTCTGCTGCCCTTCATGGTCCTGCTCATACAAGGGCTGGATGG                         TTCAATGATTTCCTCAATACCATCTTCTTCTCGTCCCCGACGGTTGCATTA
genomic: AATACACCTCTGCTGCCCTTCATGGTCCTGCTCATACAAGGGCTGGATGGgtgagtcttt ... ttccatgcagTTCAATGATTTTCTCAATACCATCTTCTTCTCGTCCCCAACGGTTGCATTA
EST: gi|30125343|gb|CB910682.1|CB910682
EST:     AATACACCTCTGCTGCCCTTCATGGTCCTGCTCATACAAGGGCTGGATGG                         TTCAATGATTTTCTCAATACCATCTTCTTCTCGTCCCCAACGGTTGCATTA
genomic: AATACACCTCTGCTGCCCTTCATGGTCCTGCTCATACAAGGGCTGGATGGgtgagtcttt ... ttccatgcagTTCAATGATTTTCTCAATACCATCTTCTTCTCGTCCCCAACGGTTGCATTA
EST: gi|30252293|gb|CB969844.1|CB969844
EST:     AATACACCTCTGCTGCCCTTCATGGTCCTGCTCATACAAGGGCTGGATGG                         TTCAATGATTTCCTCAATACCATCTTCTTCTCGTCCCCAACGGTTGCATTA
genomic: AATACACCTCTGCTGCCCTTCATGGTCCTGCTCATACAAGGGCTGGATGGgtgagtcttt ... ttccatgcagTTCAATGATTTTCTCAATACCATCTTCTTCTCGTCCCCAACGGTTGCATTA
EST: gi|30251886|gb|CB969619.1|CB969619
EST:     AATACACCTCTGCTGCCCTTCATGGTCCTGCTCATACAAGGGCTGGATGG                         TTCAATGATTTCCTCAATACCATCTTCTTCTCGTCCCCAACGGTTGCATTA
genomic: AATACACCTCTGCTGCCCTTCATGGTCCTGCTCATACAAGGGCTGGATGGgtgagtcttt ... ttccatgcagTTCAATGATTTTCTCAATACCATCTTCTTCTCGTCCCCAACGGTTGCATTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aactatattgctgggtggtgggttggattttcatttcatttttatttccatgcagTTCAATGATTTTCTCAATACCATCTTCTTCTCGTCCCCAACGGTTGCATTAATCGTCGCTATTTTCCTAGACAACACACTTGACTACAAGGACAGCGCCA
                           ttttcatttcattttt  CT-rich tract
                          attttcatttcatttt  TA-rich tract