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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtttactatttgaaacttgtgtggtctcctgttgagatattcatttgttgtgtcacttaccactttattcctccataatctacagAAAACCCAAAAGCAGAATACTACAACTGGTTTGAGAACCTGCAATAACATTCTGGCTATGACACAG

Basic information

species Vitis vinifera
transcript Vv10s0003g00670.t01
intron # 13
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30125073|gb|CB910412.1|CB910412
EST:     AGCAAAGGATAACATT                         AAAACCCAAAAGCAGAATACTACAACTGGTTTGAGAACCTGCAATAACATT
genomic: AGCAAAGGATAACATTgtaagtttac ... taatctacagAAAACCCAAAAGCAGAATACTACAACTGGTTTGAGAACCTGCAATAACATT
EST: gi|110362029|gb|EC925536.1|EC925536
EST:     ACAATAAAGCAATGGCTGCTGCTAAATCTGATGAAGCAAAGGATAACATT                         AAAACCCAAAAGCAGAATACTACAACTGGTTTGAGAACCTGCAATAACATT
genomic: ACAATAAAGCAATGGCTGCTGCTAAATCTGATGAAGCAAAGGATAACATTgtaagtttac ... taatctacagAAAACCCAAAAGCAGAATACTACAACTGGTTTGAGAACCTGCAATAACATT
EST: gi|110384203|gb|EC948624.1|EC948624
EST:     ACAATAAAGCAATGGCTGCTGCTAAATCTGATGAAGCAAAGGATAACATT                         AAAACCCAAAAGCAGAATACTACAACTGGTTTGAGAACCTGCAATAACATT
genomic: ACAATAAAGCAATGGCTGCTGCTAAATCTGATGAAGCAAAGGATAACATTgtaagtttac ... taatctacagAAAACCCAAAAGCAGAATACTACAACTGGTTTGAGAACCTGCAATAACATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttgagatattcatttgttgtgtcacttaccactttattcctccataatctacagAAAACCCAAAAGCAGAATACTACAACTGGTTTGAGAACCTGCAATAACATTCTGGCTATGACACAG
                       cacttac  putative branch site (score: 2)
                                ctttattcctccat  putative PPT
      atattcattt  TA-rich tract