Sequence
atgc intronic sequence ATGC exonic sequencegtttgatcttgaattctattgtttatttctttgctttaacaagaatctactcgtgtttctcttggtttaattacttcatattacttgaaatatgaagGTTAAGGACAATCCTTCTGGTGACTTTAAAAGCATGTACCGCCACATTTCCAAAGGATCATGGACATTCTCAGATCAGGATCATGGTTGGCAAGTTTCTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv09s0054g01520.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: GLYMA08G24160.2 (Glycine max), 3'ss of exon 3
--------gtttgatcttgaattctattgtttatttctttgctttaacaagaatctactcgtgtttctcttggtttaattacttcatattacttgaaatatgaagGTTAAGGACAATCCTTCTGGTGACTTTAAAAGCATGTACCGCCACATTTCCAAAGGATCATGGACATTCTCAGATCAGGATCATGGTTGGCAAGTTTCTG
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atatttataattgattactaaat-tagtgtttgttagacta-ttgaacaatatgtttgttgtttttatctagtaataatgaactggcattctt---attttatagGTAAAAGATAATCCTCTTGGAGATTTTAAAAGTATGTATCGTCATATTTCTAAAGGATCTTGGACATTCTCTGATCAAGATCATGGATGGCAAGTTTCTG
upper sequence: Vv09s0054g01520.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: GLYMA07G00330.1 (Glycine max), 3'ss of exon 9
gtttgatcttgaattctattgtttatttctttgctttaaca----agaatctactcgtgtttctcttgg----tttaattacttcatattacttgaaatatgaagGTTAAGGACAATCCTTCTGGTGACTTTAAAAGCATGTACCGCCACATTTCCAAAGGATCATGGACATTCTCAGATCAGGATCATGGTTGGCAAGTTTCTG
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--ttgttgtctatatctagtagtaatgaactagcattttcattttgtaggcgaaggataacccttttggagatttttatgaattggcattctt---attttatagGTGAAGGATAATCCTTTTGGAGATTTTAAAAGTATGCATCGTCATATTTCTAAAGGGTCTTGGACATTCTCTGATCAAGACCATGGATGGCAAGTTTCTG
upper sequence: Vv09s0054g01520.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: GLYMA03G27620.1 (Glycine max), 3'ss of exon 6
--gtttgatcttgaattctattgtt-tatttctttgctttaacaagaatctactcgt--gtttctcttggtt-taattacttcatattacttgaaatatgaagGTTAAGGACAATCCTTCTGGTGACTTTAAAAGCATGTACCGCCACATTTCCAAAGGATCATGGACATTCTCAGATCAGGATCATGGTTGGCAAGTTTCTG
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taatttataattgactattaagttagtgttcattagattacttaagagtatgtttgttagctttacatagtagtaatgaattgacattctt---atttcaaagGTGAGAGACAACCCTTCAGGAGATTTTAAGAGTATGTATCGTCATATTACTAAAGGGTCTTGGACATTCTCAGATCAAGACCATGGATGGCAAGTTTCTG
upper sequence: Vv09s0054g01520.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: GLYMA03G27660.1 (Glycine max), 3'ss of exon 2
-----gtttgatcttgaattctattgtttatttctttgct--ttaacaag-aatctactcgtgtttctcttggtttaattacttcatattacttgaaatatgaagGTTAAGGACAATCCTTCTGGTGACTTTAAAAGCATGTACCGCCACATTTCCAAAGGATCATGGACATTCTCAGATCAGGATCATGGTTGGCAAGTTTCTG
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tttaaattggacgacgaatt-tagtgttcattagattattgattaatatgtaatttgctagc-tttacatagcagtaatgaactaacactctt---atttcacagGTGAAGGATGACCCTTTAGGAGATTTTAAGAGTATGTATCGTCATATTTCTAAAGGGTCTTGGACATTCTCTGATCAAGATCAGGGATGGCAAGTTTCTG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gaatctactcgtgtttctcttggtttaattacttcatattacttgaaatatgaagGTTAAGGACAATCCTTCTGGTGACTTTAAAAGCATGTACCGCCACATTTCCAAAGGATCATGGACATTCTCAGATCAGGATCATGGTTGGCAAGTTTCTG
gtttaat putative branch site (score: 4)
tttaattacttcatat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtttgatcttgaattctattgtttatttctttgctttaacaagaatctactcgtgtttctcttggtttaattacttcatattacttgaaatatgaagGTTAAGGACAATCCTTCTGGTGACTTTAAAAGCATGTACCGCCACATTTCCAAAGGATCATGGACATTCTCAGATCAGGATCATGGTTGGCAAGTTTCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA