Sequence
atgc intronic sequence ATGC exonic sequence...aaccttcaaccttttgtgattgagtgatcttgctattttcgtttcttgtttcgttcggttattttggggctttctcatcttatgtttatatcccttgcagGCTTTCTGTTCCGGATTTTGGGATACTACACCGGACATCCTCTACTCGGGGCTAAAGTTGTGGCTTCAATGTTGATGTTTGCAACAGTTGCGGGTATACT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv09s0054g00700.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: GRMZM2G069410_T01 (Zea mays), 3'ss of exon 5
aaccttcaaccttttgtgattgagtga-tcttgctattttcgtttcttgtttcgttcggttattttggggctttctcatcttatgtttatatcccttgcagGCTTTCTGTTCCGGATTTTGGGATACTACACCGGACATCCTCTACTCGGGGCTAAAGTTGTGGCTTCAATGTTGATGTTTGCAACAGTTGCGGGTATACT
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-----------------------gtgagtcttgtaggtcatatctgtggt---gactggca--ctcgatgcttttctaatttg-gtttacgcggtttgcagGCGTTGTCTTCCGGATTTTGGGCCACTACACTGGTCAGCCTCTTCTTGGAGCTAAAGTTGTAGCCTCCATGCTGATGTTTGCGACGGTCGCTGGGATTCT
upper sequence: Vv09s0054g00700.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: GLYMA07G00350.1 (Glycine max), 3'ss of exon 13
aaccttcaaccttttgtgattgagtgatcttgctattttcgtttcttgtttcgttcggttattttggggcttt------ctcatcttatgtttatatcccttgcagGCTTTCTGTTCCGGATTTTGGGATACTACACCGGACATCCTCTACTCGGGGCTAAAGTTGTGGCTTCAATGTTGATGTTTGCAACAGTTGCGGGTATACT
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---caatattttttggtgattg-gtgat-ttgttattcttatatct-gtgtcatgaaatattttttatgccatgcagactttaccatatttttctatcacttgcagGTATTCTGTTCCGAATTTTGGGCTACTATACAGGGCAACCTTTACTCGGGGCCAAAGTTGTGGCTGCTTTGCTCATGTTTGCAACAGTGTCTGGTATTCT
upper sequence: Vv09s0054g00700.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: GLYMA08G24120.1 (Glycine max), 3'ss of exon 12
aaccttcaaccttttgtgattgagtgatcttgctattttcgtttct-tgtttcgttcggttattttggggcttt------ctcatcttatgtttatatcccttgcagGCTTTCTGTTCCGGATTTTGGGATACTACACCGGACATCCTCTACTCGGGGCTAAAGTTGTGGCTTCAATGTTGATGTTTGCAACAGTTGCGGGTATACT
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-----tggtgatgatgtgattg-gtggt-ttgttattcttatatctatatgttatgaaatattttttatgccatgcagactttaccatattcttatatcacttgcagGTATTGTGTTCCGTATTTTGGGCTACTATACAGGGCAACCTTTACTTGGGGCTAAAGTTGTGGCTGCTTTGCTCATGTTTGCAACAGTGACTGGTATTCT
upper sequence: Vv09s0054g00700.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: AT1G78920.2 (Arabidopsis thaliana), 3'ss of exon 13
aaccttcaaccttttgtgattgagtgatcttgctattttcgtttcttgtttcgttcggttattttggggctttctcatcttatgtttatatcccttgcagGCTTTCTGTTCCGGATTTTGGGATACTACACCGGACATCCTCTACTCGGGGCTAAAGTTGTGGCTTCAATGTTGATGTTTGCAACAGTTGCGGGTATACT
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gtaagtcagtaatatctactcgtttttctttacttactgtattgaaagtttgaaaccacaacattgtgaccaaaaacaaacctcttgttctctctttcagGTTTGGTGTTTCGAATCTTGGGTTACTACACAGGACAACCTCTGCTCGGAGCAAAAGTTGTAGCTTCTATGCTCATGTTTGCAACAGTTTGTGGTATCTT
upper sequence: Vv09s0054g00700.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: AT1G16780.1 (Arabidopsis thaliana), 3'ss of exon 14
aaccttcaaccttttgtgattgagtgatcttgctattttcgtttcttgtttcgttcggttat---tttggggctttctcatcttatgttt-atatcccttgcagGCTTTCTGTTCCGGATTTTGGGATACTACACCGGACATCCTCTACTCGGGGCTAAAGTTGTGGCTTCAATGTTGATGTTTGCAACAGTTGCGGGTATACT
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---------------gtgagtcagtaaaaatgttggttaagcccgtgaaacgagaaagaaacagacataaggaaccaacgctctctatttgatgtcc---acagGTTTTGTGTTCCGGATCTTGGGATACTACACTGGACAACCTTTGCTTGGAGCTAAAGTAGTAGCTGCAATGCTAATGTTTGCGACAGTATGTGGTATCTTMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110389581|gb|EC954434.1|EC954434EST: TTGGCTATTGTATCACCTATAGTGGCTG T
genomic: TTGGCTATTGTATCACCTATAGTGGTTGgtgggtcatc ... tcccttgcag-
EST:
gi|110389581|gb|EC954434.1|EC954434EST: TTGGCTATTGTATCACCTATAGTGGCTG T
genomic: TTGGCTATTGTATCACCTATAGTGGTTGgtgggtcatc ... tcccttgcag-
EST:
gi|37188469|gb|CF607818.1|CF607818EST: GGAGATGATAAAACCCGGTGCTTTGGCTATTGTATCACCTATAGTGGTTG GCTTTCTGTTCCGGATTTTGGGATACTACACCGGACATCCTCTACTCGGGG
genomic: GGAGATGATAAAACCCGGTGCTTTGGCTATTGTATCACCTATAGTGGTTGgtgggtcatc ... tcccttgcagGCTTTCTGTTCCGGATTTTGGGATACTACACCGGACATCCTCTACTCGGGG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttgtttcgttcggttattttggggctttctcatcttatgtttatatcccttgcagGCTTTCTGTTCCGGATTTTGGGATACTACACCGGACATCCTCTACTCGGGGCTAAAGTTGTGGCTTCAATGTTGATGTTTGCAACAGTTGCGGGTATACT
tatccctt CT-rich tract
atcttatgtttatat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
aaccttcaaccttttgtgattgagtgatcttgctattttcgtttcttgtttcgttcggttattttggggctttctcatcttatgtttatatcccttgcagGCTTTCTGTTCCGGATTTTGGGATACTACACCGGACATCCTCTACTCGGGGCTAAAGTTGTGGCTTCAATGTTGATGTTTGCAACAGTTGCGGGTATACT
- - ttcaacc
- - - - - - - - - - - - - - cttgcta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttttggg