Sequence
atgc intronic sequence ATGC exonic sequencegttctctctctctctctctctctctctctcacacacacacacacacacacacacacacacccacccacccatacacaattaatgccgctttaacaactccttgtagcagtttatgagttatatcatgaggctacctttgttgaactatgacagGTACGCTTGAATGGGGTTGCAACTTTTATAGGCATAGTTGGGCTTGCAGTTGCTGTTTCTGTACTGGCTGTCCTTTTGATAAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv09s0018g02130.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: GLYMA15G00340.1 (Glycine max), 3'ss of exon 12
gttctctctctctctctctctctctctctcacacacacacacacacacacacacacacacccacccacccatacacaattaatgccgctttaacaactccttgtagcagtttatgagttatatca------tgaggctacctttgttgaactatgacagGTACGCTTGAATGGGGTTGCAACTTTTATAGGCATAGTTGGGCTTGCAGTTGCTGTTTCTGTACTGGCTGTCCTTTTGATAAG
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----------------------------------------------gttcccccctacccccatccaaaaccaagaaaagactgttgctttagctgtaccttaaagaaagataaatgtcacgtttaaacttttaacatatttttagtgacatttaatagGTTCGTTTGAATGGAGTAGCAACTTTTATTGGCATAGTTGGGCTTACTGTAGCTGTTTGTGTACTTGCAGTCCTCTTGGGAAG
upper sequence: Vv09s0018g02130.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: GLYMA13G44990.1 (Glycine max), 3'ss of exon 13
gttctctctctctctctctctctctctctcacacacacacacacacacacacacacacacccacccacccatacacaattaatgccgctttaacaactccttgtagcagtt---tatga--gttatatcatgaggctacctttgttgaactatgacagGTACGCTTGAATGGGGTTGCAACTTTTATAGGCATAGTTGGGCTTGCAGTTGCTGTTTCTGTACTGGCTGTCCTTTTGATAAG
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----------------------------------------------gttcccccctacccccatccaaaaccaagaaaaggctgttgctttagccgtaccttaaagaagataaatgtcacgtttaaacttttaacatatttttagtgacatttaatagGTTCGTTTGAATGGAGTAGCAACTTTTATTGGCATAGTTGGGCTTACTGTAGCTGTTTGTGTCCTTGCAGTCCTGTTGGGAAG
upper sequence: Vv09s0018g02130.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: GLYMA08G23760.1 (Glycine max), 3'ss of exon 14
gttctctctctctctctctctctctctctcacacacacacacacacacacacacacacacccacccacccatacacaattaatgccgctttaacaactccttgtagcagtttatgagttatatcatgaggctacctttgttgaactatgacagGTACGCTTGAATGGGGTTGCAACTTTTATAGGCATAGTTGGGCTTGCAGTTGCTGTTTCTGTACTGGCTGTCCTTTTGATAAG
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--------------------------------------------gttccccctgctccatccaa--aacaaaaaagaaaggctgttgctttagctgtacctaattaaaacaaagatgctaaaa-gtgtgattacttttggtgatatctaatagGTACGCTTGAATGGAGTAGCAACTTTTATTGGTGTAGTTGGGCTTAGTGTAGCTGTTTTAGTGCTTGCTGTCCTCTTGGGCAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ccttgtagcagtttatgagttatatcatgaggctacctttgttgaactatgacagGTACGCTTGAATGGGGTTGCAACTTTTATAGGCATAGTTGGGCTTGCAGTTGCTGTTTCTGTACTGGCTGTCCTTTTGATAAG
tttatgagttatat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttctctctctctctctctctctctctctcacacacacacacacacacacacacacacacccacccacccatacacaattaatgccgctttaacaactccttgtagcagtttatgagttatatcatgaggctacctttgttgaactatgacagGTACGCTTGAATGGGGTTGCAACTTTTATAGGCATAGTTGGGCTTGCAGTTGCTGTTTCTGTACTGGCTGTCCTTTTGATAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT