Sequence
atgc intronic sequence ATGC exonic sequence...gttaactcatcatatacttcacttctgtaaaggcttttagttatttatatgtgaaagtcaagaatttattgtttgattctaatcactcttgataaaccagGTGGAACTTGCTGAGAAACTTCCTCACATACAGTCACTCTGTATTCATGAGATGGTTACTCGAGCATTCAAGCATGTACTCAAAGCAGTTGTTCGTTCTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv09s0002g07530.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: GLYMA07G03250.1 (Glycine max), 3'ss of exon 14
gttaactcatcatatacttcacttctgtaaag-gcttttagttatttatatgtgaaagtcaagaatttattgtttgattctaatcactcttgataaaccagGTGGAACTTGCTGAGAAACTTCCTCACATACAGTCACTCTGTATTCATGAGATGGTTACTCGAGCATTCAAGCATGTACTCAAAGCAGTTGTTCGTTCTG
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gtagtctaaataccttgctagttgaactagtgtgaatcaggttaaagctagttggtaatatagtttgcttttgttggttgtaatttct-tgagtgaatcagGTTAAACTTGCGGAGAATCTTCCACACATACAATCCCTTTGTATTCATGAGATGATCACTCGAGCTTTCAAGCATCTACTTAAAGCAGTTACTGCCTCTG
upper sequence: Vv09s0002g07530.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: GLYMA08G22850.1 (Glycine max), 3'ss of exon 12
---gttaactcatcatat--acttcacttctgtaaaggcttttagttatttatatgtgaaagtcaagaatttattgtttgattctaatcactcttgataaaccagGTGGAACTTGCTGAGAAACTTCCTCACATACAGTCACTCTGTATTCATGAGATGGTTACTCGAGCATTCAAGCATGTACTCAAAGCAGTTGTTCGTTCTG
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gttgtcgaaataccttgctagttgaactactgtgaa----tcaggttaaagctatttggtaatatagtttgcttttgttggttctaatttcttgtg-tgaatcagGTTAAACTTGCAGAGAATCTGCCACACATACAATCCCTTTGTATTCATGAGATGATCACTCGAGCTTTCAAGCATCTACTTAAAGCAGTTATTGCCTCTG
upper sequence: Vv09s0002g07530.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: AT1G15290.1 (Arabidopsis thaliana), 3'ss of exon 11
----------------------------------------------------------------------gttaactcatc-atatacttcacttctgtaaaggcttttagttatttatatgtgaaagtcaagaatttattgtttgattctaatcactcttgataaaccagGTGGAACTTGCTGAGAAACTTCCTCACATACAGTCACTCTGTATTCATGAGATGGTTACTCGAGCATTCAAGCATGTACTCAAAGCAGTTGTTCGTTCTG
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gtaagaatgctttaccttgttaatagcgcctttccctgttttcaagttattttgattttgaaagaataaagccagtttgttgatctcaagggactttgttgaggtcggacgtagtttatggtaaatagatgttaatgagtatttcggtcc--actatacct-atgaatcagGCTAAACTTGCTGAGAAACTTCCTCATATACAGTCCCTCTGTATTCATGAGATGATTACAAGAGCTTTCAAGCATCTTCTTAGGGCGGTTATTGCATCTG
upper sequence: Vv09s0002g07530.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: EFJ26734 (Selaginella moellendorffii), 3'ss of exon 13
gttaactcatcatatacttcacttctgtaaaggcttttagttatttatatgtgaaagtcaagaatttattgtttgattctaatcactcttgataaaccagGTGGAACTTGCTGAGAAACTTCCTCACATACAGTCACTCTGTATTCATGAGATGGTTACTCGAGCATTCAAGCATGTACTCAAAGCAGTTGTTCGTTCTG
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--------------------------gtaa-gtcttttgtttctttctcttcatatgcaaacttttaattatttggatttt----tgtttgatagagtagGCTGAACTCTCGAAAAAGCTTCCACACATTCAGTCTCTGTGTGTTCATGAGATGGTTGTTCGAGCGTTCAAGCATGTACTTCGTGCAATGGTTGCAGCTG
upper sequence: Vv09s0002g07530.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: EFJ26424 (Selaginella moellendorffii), 3'ss of exon 13
gttaactcatcatatacttcacttctgtaaaggcttttagttatttatatgtgaaagtcaagaatttattgtttgattctaatcactcttgataaaccagGTGGAACTTGCTGAGAAACTTCCTCACATACAGTCACTCTGTATTCATGAGATGGTTACTCGAGCATTCAAGCATGTACTCAAAGCAGTTGTTCGTTCTG
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--------------------------gtaa-gtcttttgtttctttctctttcttcatatgcaaacttttaattatttggctttttgtttgatagagtagGCTGAACTCTCGAAAAATCTTCCACACATTCAGTCTCTGTGTGTTCATGAGATGGTTGTTCGAGCGTTCAAGCATGTACTTCGTGCAATGGTTGCAGCTGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110370999|gb|EC934684.1|EC934684EST: CGGATTTTATGCATTTAAGAGGACTACAGATGCGCTCTTTGGGTCGTGTG GTGGAACTTGCTGAGAAACTTCCTCACATACAGTCACTCTGTATTCATGAG
genomic: CGGATTTTATGCATTTAAGAGGACTACAGATGCGCTCTTTGGGTCGTGTGgttagaaact ... gataaaccagGTGGAACTTGCTGAGAAACTTCCTCACATACAGTCACTCTGTATTCATGAG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tatatgtgaaagtcaagaatttattgtttgattctaatcactcttgataaaccagGTGGAACTTGCTGAGAAACTTCCTCACATACAGTCACTCTGTATTCATGAGATGGTTACTCGAGCATTCAAGCATGTACTCAAAGCAGTTGTTCGTTCTG
aatttattgtttgatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttaactcatcatatacttcacttctgtaaaggcttttagttatttatatgtgaaagtcaagaatttattgtttgattctaatcactcttgataaaccagGTGGAACTTGCTGAGAAACTTCCTCACATACAGTCACTCTGTATTCATGAGATGGTTACTCGAGCATTCAAGCATGTACTCAAAGCAGTTGTTCGTTCTG
- - actcatc
- - - - - - - - - - -cttctgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcaagaa