Sequence
atgc intronic sequence ATGC exonic sequence...tttcctagattcatagcatggatttaaatataatcatatatatttattacatataaataaaaaaagtgaagcttcttagacctttgatttaatttatcagGTACAAGTGCTGATATTATGAAGGTTGGCGGTTACAAGTTATCTGCATTAGAAATTGAAGCAGCGTTGTTAGAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv09s0002g04170.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: GRMZM2G460078_T01 (Zea mays), 3'ss of exon 13
------------------------------tttcctagattcatagcatggatttaaatataatcatatatatttattacatataaataaaaaaagtgaagcttcttagacctttgatttaatttat-cagGTACAAGTGCTGATATTATGAAGGTTGGCGGTTACAAGTTATCTGCATTAGAAATTGAAGCAGCGTTGTTAGAG
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gtaagtaacagtttttatgcacatgcacgcacgcttatgtccttctagttgctgttttcatcacctcgtggtgttactgcctagggtcagcttcggtttgcttgtagcctcatttgcattaccttgtgcagGCACAAATGCCGACATTATGAAATTTGGCGGTTACAAGCTGTCAGCATTAGAAATTGAGGCAGTACTGTTAGAG
upper sequence: Vv09s0002g04170.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: GRMZM2G460078_T03 (Zea mays), 3'ss of exon 13
------------------------------tttcctagattcatagcatggatttaaatataatcatatatatttattacatataaataaaaaaagtgaagcttcttagacctttgatttaatttat-cagGTACAAGTGCTGATATTATGAAGGTTGGCGGTTACAAGTTATCTGCATTAGAAATTGAAGCAGCGTTGTTAGAG--------------------------
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gtaagtaacagtttttatgcacatgcacgcacgcttatgtccttctagttgctgttttcatcacctcgtggtgttactgcctagggtcagcttcggtttgcttgtagcctcatttgcattaccttgtgcagGCACAAATGCCGACATTATGAAATTTGGCGGTTACAAGCTGTCAGCATTAGAAATTGAGGCAGTACTGTTAGAGGTAAACTCGGATACGCTGGAACTACT
upper sequence: Vv09s0002g04170.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: GLYMA07G02180.1 (Glycine max), 3'ss of exon 13
------tttcctagattcatagcatggatttaaatataatcatatatatttattacatataaataaaaaaagtgaagcttcttagacctttgatttaatttatcagGTACAAGTGCTGATATTATGAAGGTTGGCGGTTACAAGTTATCTGCATTAGAAATTGAAGCAGCGTTGTTAGAG
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aaaaagatccctacacctgaacttatcatcagagtagaaggttagattgtgatggcgttaaaactaaaagaaacatgcatgtt----ctctactt--gtttatcagGTACTAATGCTGATATAATCAAGGCTGGTGGATATAAGCTGTCTGCATTAGAAATTGAATCGGTTATAATAGAG
upper sequence: Vv09s0002g04170.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: AT3G16170.1 (Arabidopsis thaliana), 3'ss of exon 11
-tttcctagattcatagcatggatttaaatataatcatatatatttattacatataaataaaaaaagtgaagcttcttagacctttgatttaatttatcagGTACAAGTGCTGATATTATGAAGGTTGGCGGTTACAAGTTATCTGCATTAGAAATTGAAGCAGCGTTGTTAGAG
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gtaagcagaacctataa-gtacattcaaacacaatt-taaaagtactttgtgttccttcatttaacat----cttatcttatcttctctggtgtcgatcagGTAATAGCGCTGACATTATGAAGGTTGGAGGATACAAGTTATCTGCCTTAGAAATCGAATCAACCCTTCTCGAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.attacatataaataaaaaaagtgaagcttcttagacctttgatttaatttatcagGTACAAGTGCTGATATTATGAAGGTTGGCGGTTACAAGTTATCTGCATTAGAAATTGAAGCAGCGTTGTTAGAG
atttaat putative branch site (score: 4)
atataaataaaaaaag TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tttcctagattcatagcatggatttaaatataatcatatatatttattacatataaataaaaaaagtgaagcttcttagacctttgatttaatttatcagGTACAAGTGCTGATATTATGAAGGTTGGCGGTTACAAGTTATCTGCATTAGAAATTGAAGCAGCGTTGTTAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - -gcatgga
- - - - - - - - - - - - -aaatata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaaa